Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00132 ATGGAGGAAAAGTACACTGAATTCTCACAGCATTTGAAGAAACCTAGAATTTCAGAAGAAACCAATTCGAAAATCAAAACTGAACTATGCAGAAGATTCATGCAAGGTCTTTGTGTTCATGGTTCAAAATGCAACTTCGCTCATGGCTTCTCTGAACTCAGAACTGCCCCCAAACTATGCAGAATGTTCTTGTACAACAGACAGTGTACCTATGGCCATGCTTGTCGTTACCTTCACTCATCAGTTCCTCTTCAGCATCATCATGATCATGGCCATCACCATTCTCGCTTCAATGTGTCTTCTGCTGCAAAACCAGAACTAGGGACAGTGCAGAATGCAAAACAAGGGACAAAGGAGAATGCTGGAAGCATGATCATGCAAACTAGTGCTGCTGCTGCTGCTACAACTGGTGGCCACTCTTCTGCACAAAACAACATAATGCCAACTTCTAGTTCTACTCCTGCTACAAATGCCTCTGCCAGCCCAGCAGTGGCAACTACTTCTTTCCATAAGAATGGACCCTATGCCTGTAAAACCATATTCGACGAAAAGAAACTGCAAAGGGTAAGCCGCATCTATGGTGATTGGATTTAA 594 0.4343 MEEKYTEFSQHLKKPRISEETNSKIKTELCRRFMQGLCVHGSKCNFAHGFSELRTAPKLCRMFLYNRQCTYGHACRYLHSSVPLQHHHDHGHHHSRFNVSSAAKPELGTVQNAKQGTKENAGSMIMQTSAAAAATTGGHSSAQNNIMPTSSSTPATNASASPAVATTSFHKNGPYACKTIFDEKKLQRVSRIYGDWI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00132 197 ProSiteProfiles Zinc finger C3H1-type profile. 24 51 IPR000571 GO:0046872
Vifa5g00132 197 SUPERFAMILY CCCH zinc finger 23 55 IPR036855 GO:0046872
Vifa5g00132 197 SMART c3hfinal6 56 81 IPR000571 GO:0046872
Vifa5g00132 197 SMART c3hfinal6 24 50 IPR000571 GO:0046872
Vifa5g00132 197 Gene3D - 13 83 - -
Vifa5g00132 197 MobiDBLite consensus disorder prediction 129 159 - -
Vifa5g00132 197 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 163 IPR045877 GO:0003729
Vifa5g00132 197 FunFam zinc finger CCCH domain-containing protein 15-like 18 56 - -
Vifa5g00132 197 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Vifa5g00132 197 SUPERFAMILY CCCH zinc finger 57 82 IPR036855 GO:0046872
Vifa5g00132 197 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 26 50 IPR000571 GO:0046872
Vifa5g00132 197 MobiDBLite consensus disorder prediction 86 105 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00132 26 80 C3H Transcription Factor Family AT1G68200 42.857 6.00e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa5g00132 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00132 - K18753 psat:127087552 329.331