Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00118 ATGTCCAATCGGAATGATTCTAGTTATAGTTCAATACCTGGTAAATCATCATCGTATGTAGAATTACAGCCTCAAAATGGTTCATCAGATTCTTTTCGAAGATTGTCTTTTGATGAGGGTGGAGGGTTTTTGAGATCTAAGGTTGATGATGATGATGATGATGAGGGTGAACATTTTGAAATTGATATTGATAATTATCCTCTTGTCGTTGGGCCTACTGGAAATCATGGTTCTGGTGTTCCTGGCGCTGTGTTCAATTTGACTACTACTATTATTGGGGCTGGACTTATGGCTCTTCCTGCTACCATGAAAGTTCTTGGAGTTTTTATGGGGATTGTGTTGATTATTTTGATGGGGGTTTTGTCGGAAATTAGTGTCGAATTGTTGATTCGTTTTTCTGTTTTGTGTAAAGCCTCGTCTTATGGTGAGGTTGTTCAACATGCTATGGGAAGACCTGCTAGGATTTTGTCCGAGATTTGTATTATTTTGAATAATGCTGGTGTTTTGGTTGTTTATTTGATTATAATGGGGGATGTTATGTCAGGTTCGGTTCATCATTTAGGGGTTTTTGATCAGTTGATGGGGAACGGGGTTTGGGATCAGAGGAAGCTTGTGATTCTTGTTGTTATGGTGATTTTTCTAGCGCCGTTGTGTTCCCTTGATAAGATTGATTCGTTGAGCTTGACTTCTGCTGCGTCGGTTGCTCTTGCTGTAATGTTTGTTGTTGTTGCTTTCGCTGTTGCTTCCATTAAGCTTGTTGAAGGAAAGATTGATGCTCCGAGGATGCTTCCGGATCTTAGTTCGAAAAAGGCTATTTTGGATTTACTTGTGGTGATTCCAATCATGACGAATGCGTATGTTTGTCATTTTAATGTGCAGCCGATTTACAACGAGCTTGAAGGTAGATCACCGCAGAAGATGAATCGTGTAGGAAGGTTCACCACGATTTTGTGCATTCTGGTTTATGCTGCAACGGCATTATCTGGTTATCTGTTATTTGGGGACGATACGGAGTCGGATGTCCTGACTAATTTTGATAAGGATCTTGGAATCCGGTTTAGTTCGGCCTTGAACTATATTGTTAGAGTCGGCTACATTCTCCATTTGATACTTGTCTTTCCTGTTATTCATTTCTCACTACGCCAAACAGTGGATACATTGATTTTCAAGGGATCGCCTCCTTTAACAGTAAGTAAGAAGAGATCGCTAGGGCTGACTTTGGTTCTGTTGATCCTCATATACATCGGGTGTACCATGATTCCAAACATTTGGACAGCTTTTAAGTTCACCGGCGCAACGACGGCGGTTTCGCTAGGTTTCATATTTCCACCTCTTGTTGCAATAAGATTAAGTCATAAAGGAGATTTGAGTCATGTAGAAATGATTTTGTCCTGGTTAATGTTGGTATTGGCCGTGACTGTTAGCATCGTAGGAGTCGTCAGCAATATATATAGCATTGAGAGTAAGTCTTAG 1473 0.4046 MSNRNDSSYSSIPGKSSSYVELQPQNGSSDSFRRLSFDEGGGFLRSKVDDDDDDEGEHFEIDIDNYPLVVGPTGNHGSGVPGAVFNLTTTIIGAGLMALPATMKVLGVFMGIVLIILMGVLSEISVELLIRFSVLCKASSYGEVVQHAMGRPARILSEICIILNNAGVLVVYLIIMGDVMSGSVHHLGVFDQLMGNGVWDQRKLVILVVMVIFLAPLCSLDKIDSLSLTSAASVALAVMFVVVAFAVASIKLVEGKIDAPRMLPDLSSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRSPQKMNRVGRFTTILCILVYAATALSGYLLFGDDTESDVLTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDTLIFKGSPPLTVSKKRSLGLTLVLLILIYIGCTMIPNIWTAFKFTGATTAVSLGFIFPPLVAIRLSHKGDLSHVEMILSWLMLVLAVTVSIVGVVSNIYSIESKS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00118 490 MobiDBLite consensus disorder prediction 1 34 - -
Vifa5g00118 490 PANTHER AMINO ACID TRANSPORTER 75 474 - -
Vifa5g00118 490 MobiDBLite consensus disorder prediction 1 33 - -
Vifa5g00118 490 Pfam Transmembrane amino acid transporter protein 77 480 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00118 Vifa-Chr5 14361295 14362767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00118 6 490 Amino Acid or Auxin Permease AAAP Family AT1G80510 71.255 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00118 - - gmx:100813328 758.059