Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00107 ATGTGGAGTTCAAGCAGGGAGGAACCGAGTGAATCTTTTCCATTCTCCACATCCGTCTTCAATTTCTCTTCCGGAAATCCTAGAATCGAAGAAACTCGCGGCCTCATGCACTTCTTCCCCGAAGAATCTCCTCCTTCTCTTCCGGTCGAACGGAAACCACTGGCATGTGTTCTTGGAGTACCCAATCACATGACGTATGCGGATTTCTGCCAATTCTGTGGCTCCTTTATTCACCACATTCTTGAAATGCGTATTGTCAGAATGGATTCAATGGAAGATCGATACAGTGTTTTGATTCGCTTCGATGAACAGCAATCGACTGACGCGTTCTACACTCATTATAATGGTCGACGCTTCTCGTCTCTCGAGGTTGAGGTGTGCCGAGTTGTTTTTACATTAGATGTTCAATATACAGGCTCGATTGAACACGCGCAACCTTCCAATGCCCCTTCAACCGAACAGCCAACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCGGTATGCCGCTATTGCCAACAGCAAGCTGAAAAGTCTATATGTTTCATTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGTTTTGTTGGTTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAGACGCAACATTGCTATTCCTTAGAAGTGGAAACTAAGCGCGTCTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTAGAGCTGAACTCTCACTGTGTGCATGCAGACAGTGGATGTGGCAGCTGTGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAATACAATGAGTTGCTTGCTACTCAACTCGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTTGAACAAGAAACTGAAGGAAAAATTTCTGTAGCTGTTCAAAAGGCTGTGAGTCTCAAACAGCAAAAGATTCAGTCCAAGATCGATAGATTTAACAAAGAGAAGAAATTTCTGGATGAGCTTAATGACAATCTTTTGAAGAATGAGGAGATCTGGAAAGCCAAGATACTTGAGATTGAAGAGAGAAAGAAAAAAACTTTAAAACGGACTGACTATAAGATAACGGGCCTAGAAAAGCAGCTTAGTGACCTCATGGTTTGTCTTGAGGGTGGAAAGGTGGTAGAACAGCTGCCATTGCTAAATGACACAACTGGTGGAACTGTCTCTGACATTTCAAAAGAATCCTCATCAACTTGTAGTTCTTAG 1374 0.4156 MWSSSREEPSESFPFSTSVFNFSSGNPRIEETRGLMHFFPEESPPSLPVERKPLACVLGVPNHMTYADFCQFCGSFIHHILEMRIVRMDSMEDRYSVLIRFDEQQSTDAFYTHYNGRRFSSLEVEVCRVVFTLDVQYTGSIEHAQPSNAPSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFICQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADSGCGSCGDNAMREAILNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVSLKQQKIQSKIDRFNKEKKFLDELNDNLLKNEEIWKAKILEIEERKKKTLKRTDYKITGLEKQLSDLMVCLEGGKVVEQLPLLNDTTGGTVSDISKESSSTCSS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00107 457 ProSiteProfiles Zinc finger RING-type profile. 157 197 IPR001841 -
Vifa5g00107 457 ProSiteProfiles Zinc finger UBP-type profile. 191 284 IPR001607 GO:0008270
Vifa5g00107 457 Pfam Zn-finger in ubiquitin-hydrolases and other protein 208 267 IPR001607 GO:0008270
Vifa5g00107 457 SMART ring_2 157 196 IPR001841 -
Vifa5g00107 457 Pfam BRCA1-associated protein 2 48 144 IPR011422 -
Vifa5g00107 457 CDD RING-H2_BRAP2 155 198 IPR047243 -
Vifa5g00107 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 278 IPR013083 -
Vifa5g00107 457 Coils Coil 320 340 - -
Vifa5g00107 457 CDD RRM_BRAP2_like 56 136 - -
Vifa5g00107 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 198 IPR013083 -
Vifa5g00107 457 PANTHER BRCA1-ASSOCIATED PROTEIN 12 453 - -
Vifa5g00107 457 SMART Zf_UBP_1 207 256 IPR001607 GO:0008270
Vifa5g00107 457 Pfam Ring finger domain 156 197 IPR001841 -
Vifa5g00107 457 Coils Coil 364 384 - -
Vifa5g00107 457 SUPERFAMILY RING/U-box 173 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00107 Vifa-Chr5 13504722 13507781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00107 153 197 C3H Transcription Factor Family AT1G72220 48.936 2.23e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00107 K10632 - gmx:100794688 755.747