Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00102 ATGAATTTTCTTATTCTCTTCATTACCATTTCTGTTTCCTCAATGATTCTCAATGCTAATGCTCAATCTCAACCTCAAGCTCAATCTCCAGGAAATCAAGATGTTAGAATAGTGCATCACCAGAATTTGAATAAGAGAATTCTACTAGCATTGATTGCTTCTTCTGCTCTTGCTGGAATCTTCATCTTCTTATTGTTTTTCTTCTTACGGCGAAATAGAAAATTAACAATCTGCGCGAGTAAAAGCCGAGGAACCTTAGAGGCTGCGAAGAGGGAAAAGGAAAACATAAGTTCTGTTAGTGCTAAACTTAACTACTCGAGACTGGCTGATAAGAAGAGTTCGATTGCTATTTTCGACTTTCAATTGTTAGAAGGTGCAACAAACAACTTTTCCAGAGATAATATTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGAGCTCGTTTCGATGAACATTTCAAGGCTGCTGTGAAGAAAGCGGACAGTGATGCGGATAGAGAATTTGAGAATGAAGTGAGTTTGTTGAGCAAGATTCGGCATCAGAATATCATAAAACTCCTGGGCTATTGTATTCACGGTGAATCGAGGTTTCTTGTTTATGAGTTCATGGACAGTGGTTCTCTGGAAACTCAGTTGCACGGTCCTACTCGCGGATCGTCTTTAACTTGGTATATCCGGTTAAGAATCGCAATTGATGTTGCTAGAGCATTAGAATATCTCCACGAAAACTCCAATCCTCCTGTGGTTCATAGAGACTTAAAATCTTCCAATATTCTTCTCGATTCTGATTTTAACGCCAAGCTATCAGATTTTGGACTCGCTGTAGCTTCTGGCGTGCAACACAAGAACATGAAAATGTCGGGAACTTTAGGATATGTGGCACCCGAGTACATATCACACGGTAAACTAACTGATAAAAGCGATGTCTATGCTTTCGGGGTTGTACTTCTAGAGCTTCTTACCGGAAGAAAACCGATGGAAAACATGTCTTCAGACCAATATCAATCATTGGTTTCATGGGCCATGCCTCAGTTAACTGACAGATCAAAGCTTCCAAGTATTTTGGATCCTGTTATCCAAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTGCTTTGTGTGCAAGCAGAACCAAGTTACAGACCACTTATAACAGATGTCTTGCACTCTCTCATTCCTTTGGTACCCTTAGAGCTTGGAGGATCACTCAGAGTTACAGAACCAATCGGCTCGCAGGATTTTCAGTGA 1263 0.4038 MNFLILFITISVSSMILNANAQSQPQAQSPGNQDVRIVHHQNLNKRILLALIASSALAGIFIFLLFFFLRRNRKLTICASKSRGTLEAAKREKENISSVSAKLNYSRLADKKSSIAIFDFQLLEGATNNFSRDNIMGESGSRIVYRARFDEHFKAAVKKADSDADREFENEVSLLSKIRHQNIIKLLGYCIHGESRFLVYEFMDSGSLETQLHGPTRGSSLTWYIRLRIAIDVARALEYLHENSNPPVVHRDLKSSNILLDSDFNAKLSDFGLAVASGVQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIQNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPLELGGSLRVTEPIGSQDFQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00102 420 FunFam probable receptor-like protein kinase At1g80640 203 401 - -
Vifa5g00102 420 Pfam Protein tyrosine and serine/threonine kinase 147 363 IPR001245 GO:0004672|GO:0006468
Vifa5g00102 420 Gene3D Phosphorylase Kinase; domain 1 89 202 - -
Vifa5g00102 420 CDD STKc_IRAK 136 399 - -
Vifa5g00102 420 Gene3D Transferase(Phosphotransferase) domain 1 203 401 - -
Vifa5g00102 420 PANTHER OS01G0750732 PROTEIN 23 398 - -
Vifa5g00102 420 SUPERFAMILY Protein kinase-like (PK-like) 111 396 IPR011009 -
Vifa5g00102 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vifa5g00102 420 SMART serkin_6 130 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00102 420 ProSiteProfiles Protein kinase domain profile. 130 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00102 Vifa-Chr5 13095188 13097599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00102 21 342 Receptor kinase-like Gene Family AT1G80640 47.273 8.99e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vifa5g00102 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00102 - - gmx:100811188 610.527