Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00098 ATGGACCTTCTAAGATTAGAACCATGTTCATCTCATAATTTGAATCTCTCTTTTTCTGACAAAAGACAGACAGAAAATGAAGAGGAGAAACATCATCTACTTCTTGATTTAAGTCTTCCTAGCAAAGAACATTCGGGTGATAAGGAGTCGTCGAAGCAAGAACTCAATCTCATAAACTGTTTTGATACCGAGGCGTCGAATTCGATGAACTCATCCACAGAATCTAATCATGGTAATGAATTAGAGCCAAGGATTTTCTCATGCAACTACTGTCAAAGAAAGTTTTATAGTTCACAGGCACTTGGTGGACACCAAAATGCACACAAAAGAGAAAGAACCATGGCGAAAAGAGGATACAAAACTACAGTTTCGCTAGATTTTGAACACAGGTACAAAAGTTTGGCTTCTCTACCTTTGCATGGCTCATATATCAGATCATCATCGTCTTCTTCACCATCACTCGGAATTCAGGTGCATTCTTCTATGATTCATAAACCTTGTTATCAAGCACCGTTTTTCGGTTTGTCTCGTTCTCGTGTTCAAAGCCAGTGGCAGAAGCTGCCTGTGTATTCACAACCAGCAATCGGAAATCTTGCATCAGAAACTGATGGATCATCATTTTCTCCATCAAAGGTTCAAGATGGATTTGGAGGATACTGGTTTGGTAACAGTGCTACTGCTACTGATACACGTTTGAAGACTAAACAAGATGAGTTGCAGAAGCTTGATTTGTCCCTCAAACTCTAA 747 0.3949 MDLLRLEPCSSHNLNLSFSDKRQTENEEEKHHLLLDLSLPSKEHSGDKESSKQELNLINCFDTEASNSMNSSTESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGYKTTVSLDFEHRYKSLASLPLHGSYIRSSSSSSPSLGIQVHSSMIHKPCYQAPFFGLSRSRVQSQWQKLPVYSQPAIGNLASETDGSSFSPSKVQDGFGGYWFGNSATATDTRLKTKQDELQKLDLSLKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00098 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 248 IPR044246 GO:0009788
Vifa5g00098 248 FunFam Zinc finger protein 2 62 132 - -
Vifa5g00098 248 SUPERFAMILY beta-beta-alpha zinc fingers 83 114 IPR036236 -
Vifa5g00098 248 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Vifa5g00098 248 Gene3D Classic Zinc Finger 62 136 - -
Vifa5g00098 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00098 Vifa-Chr5 12997186 12997932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00098 13 248 C2H2 Transcription Factor Family AT5G10970 37.354 2.54e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g00098 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00098 - - gmx:100812573 239.965