Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00096 ATGGCATCTCAACATCGTCCAGGTTTTCATAGAATAATACCGAAGAATAAAAAACTGCGATTTCCCAAGATATACGTGCAAAAATATTGGAAAGGAACCTCAAATCCAATATTTCTGAGACTTCCAAATGGTGTTCAACACAAAATATTTTGGGAAGAACGTGACGGCGATATTTGGTTTCAGAAAAATTGGAAAGAGTTTGCAAAGTTTTTGAAATATGGATATTTCTTAACATTTAAACATACTGGTGGATCATACTTCAAGGTGAAGATATTTGATCTTAGCTCTTTAGAAATAAATTATTCAAATATAAGATGTTTAGATCAAGTTCTTGAAAGTGAAGAAGGAACTAAAGTAATTGTTGATTTGAGTGATGATGAGAGTTTAGATGAGAGTGAAGAACGCACACAAACTCAAAAGAGAAAAAATGGCAAAACAAAAGTTGCAGATTTGAATTCAAGCAGAAACAGAGGTGTGATTAAGAAGGCCAAAAAATGTTCAAACATAGCAAATATTAATGATTTGAGAGTTAATAAGGAATGTCCATATTTTGAAGTTACATTGACACCATCTTATGTCAATTATTATAGGCTGAGGATACCAAAGGTGTTCTCAAGAGAATATTTAAAAAAGATGGAAGAAATTGCAATCTTAAAAGTTGGGGAGGATATGCCTATGGAAGTGAAGATCAAGTTTGATGCTAACGCGAATGGAATGGTTTTGCGAAGTGGTTGGAAGAATTTTTCACAAACATATAATTTACAAATTGGTGATATTTGTAAATTTGTGATGACACAATCCAAACCACTTTTATTTTCTATTGCTATTACTCGAGCTAAAGTGGAAACAAGACCAAAGAAGTTCCAAGATGTCTCTTCTGATGATGGTGATGGTGATACAATTCCAAAAAGAAAAAGAGGTCATCCAAAAAAACATGTTTCCAAAGATATGGTGTGA 957 0.3271 MASQHRPGFHRIIPKNKKLRFPKIYVQKYWKGTSNPIFLRLPNGVQHKIFWEERDGDIWFQKNWKEFAKFLKYGYFLTFKHTGGSYFKVKIFDLSSLEINYSNIRCLDQVLESEEGTKVIVDLSDDESLDESEERTQTQKRKNGKTKVADLNSSRNRGVIKKAKKCSNIANINDLRVNKECPYFEVTLTPSYVNYYRLRIPKVFSREYLKKMEEIAILKVGEDMPMEVKIKFDANANGMVLRSGWKNFSQTYNLQIGDICKFVMTQSKPLLFSIAITRAKVETRPKKFQDVSSDDGDGDTIPKRKRGHPKKHVSKDMV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00096 318 SMART B3_2 9 95 IPR003340 GO:0003677
Vifa5g00096 318 SMART B3_2 184 280 IPR003340 GO:0003677
Vifa5g00096 318 CDD B3_DNA 17 93 IPR003340 GO:0003677
Vifa5g00096 318 MobiDBLite consensus disorder prediction 133 147 - -
Vifa5g00096 318 Pfam B3 DNA binding domain 184 268 IPR003340 GO:0003677
Vifa5g00096 318 ProSiteProfiles B3 DNA-binding domain profile. 183 280 IPR003340 GO:0003677
Vifa5g00096 318 PANTHER B3 DOMAIN-CONTAINING 3 146 - -
Vifa5g00096 318 MobiDBLite consensus disorder prediction 124 147 - -
Vifa5g00096 318 MobiDBLite consensus disorder prediction 286 318 - -
Vifa5g00096 318 SUPERFAMILY DNA-binding pseudobarrel domain 178 274 IPR015300 -
Vifa5g00096 318 SUPERFAMILY DNA-binding pseudobarrel domain 17 95 IPR015300 -
Vifa5g00096 318 Gene3D - 154 281 IPR015300 -
Vifa5g00096 318 Gene3D - 1 96 IPR015300 -
Vifa5g00096 318 CDD B3_DNA 182 268 IPR003340 GO:0003677
Vifa5g00096 318 MobiDBLite consensus disorder prediction 286 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00096 Vifa-Chr5 12804052 12805537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00096 6 301 B3 DNA Binding Superfamily AT3G18990 26.171 1.93e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g00096 B3 1.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00096 - - psat:127093150 300.056