Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00093 ATGGCATCTCAACATCGTCCAGGTTTTCATAGAATAATACCGAAGAATAAAAAACTGCGATTTCCCAAGATATACGTGCAAAAATATTGGAAAGGAACCTCAAATCCAATATTTCTGAGACTTCCAAATGGTGTTCAACACAAAATATTTTGGGAAGAACGTGACGGCGATATTTGGTTTCAGAAAAATTGGAAAGAGTTTGCAAAGTGTTTGAAATATGGATATTTCTTAACATTTAAACATACTGGTGGATCATACTTCAAGGTGAAGATATTTGATCTTAGCTCTTTAGAAATAAATTATTCAAATATAAGATGTTTAGATCAAGTTCTTGAAAGTGAACAAGGAACTAAAGTAATTGTTGATTTGAGTGATGATGAGAGTTTAGATGAGAGTGAAGAACGCACACAAACTCAAAAGAGAAAAAATGGCAAAACAAAAGTTGCAGACTTGAATTCAAGTAGAAACAAAGGTGTGATTAAGAAGACCATAAAATGTTCAAACATAGCAAATATTAATGATTTGAGAGTTAATAATGAAAGTCCATATTTTGAAGTAACATTGACACCATCTTATGTCAATTATAGGCTGAGGATATCAAAGGTGTTCTCAAGAGAATATTTAAAAAAGATGGAAGAAATTGCAATCTTAAAAGTTGGGGAGGATATGCCTATGGAAGTGAAGATCAAGTTTGATGCTAACGCGAATGGAATGGTTTTGCGAAGTGGTTGGAAGAATTTTTCACAAAAATATAATTTGCAAATTGGTGATATTTGTAAATTTGTGATGACACAATCCAAACCACTTTTATTTTCTATTGCTATTACTCGAGCCAAAATGGAAACAAAACCAAACAAGTTCCAAGGTGTCTCTTCTGGTGATGATACAATTCCAAAAAGAAAAAGAGGTCGCCCAAAAAAACATGTTTCCAAAGATATGGCGTGA 945 0.327 MASQHRPGFHRIIPKNKKLRFPKIYVQKYWKGTSNPIFLRLPNGVQHKIFWEERDGDIWFQKNWKEFAKCLKYGYFLTFKHTGGSYFKVKIFDLSSLEINYSNIRCLDQVLESEQGTKVIVDLSDDESLDESEERTQTQKRKNGKTKVADLNSSRNKGVIKKTIKCSNIANINDLRVNNESPYFEVTLTPSYVNYRLRISKVFSREYLKKMEEIAILKVGEDMPMEVKIKFDANANGMVLRSGWKNFSQKYNLQIGDICKFVMTQSKPLLFSIAITRAKMETKPNKFQGVSSGDDTIPKRKRGRPKKHVSKDMA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00093 314 Gene3D - 1 96 IPR015300 -
Vifa5g00093 314 ProSiteProfiles B3 DNA-binding domain profile. 182 279 IPR003340 GO:0003677
Vifa5g00093 314 SMART B3_2 184 279 IPR003340 GO:0003677
Vifa5g00093 314 SMART B3_2 9 95 IPR003340 GO:0003677
Vifa5g00093 314 MobiDBLite consensus disorder prediction 284 314 - -
Vifa5g00093 314 CDD B3_DNA 17 93 IPR003340 GO:0003677
Vifa5g00093 314 MobiDBLite consensus disorder prediction 133 147 - -
Vifa5g00093 314 CDD B3_DNA 182 267 IPR003340 GO:0003677
Vifa5g00093 314 MobiDBLite consensus disorder prediction 125 147 - -
Vifa5g00093 314 SUPERFAMILY DNA-binding pseudobarrel domain 178 275 IPR015300 -
Vifa5g00093 314 Gene3D - 138 280 IPR015300 -
Vifa5g00093 314 Pfam B3 DNA binding domain 184 267 IPR003340 GO:0003677
Vifa5g00093 314 PANTHER B3 DOMAIN-CONTAINING 3 146 - -
Vifa5g00093 314 SUPERFAMILY DNA-binding pseudobarrel domain 17 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00093 Vifa-Chr5 12699944 12702081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00093 6 277 B3 DNA Binding Superfamily AT3G18990 25.369 6.16e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g00093 B3 8.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00093 - - psat:127093150 292.352