Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00092 ATGGAGCATCACACTGAGATAATCAAGAGTGGGTGCCATAAGATTCTGGAAGGAATCAATTCAATGTCTTGGGTAAATTTAGATGACCAGCAAGTTCATTCCTTAGTGATGATGAGAGAAATTGCGCGCGGGGTTGTTGATGATCGAGATAGAAAGGTGACTAAGAATGACGTGATTACTACGTTGCGCTACAGCATTGAGAAAATGGTGTGTGCATCGAGAGATATCGTTCATATGTTAAGTAGGATGTCCTATGAAGGCTTGGATGACCAGAGGATGCATTTAGTTTTGAGGATGAAGGAAATTGCTCATGGGATTGTTGATAAGCAACCTAGAGTTGCAATAACTACGTCTGAGATACTTGTGGACCAAGTTTGCTTTGTGGATGAAGGGGCGAGAGACAGTCCTGTGGTTGACTCGATCAAGATCAGCAATGGGGATATTCTTATTGATGAGGCACAAAGCACGATGCATGAAGATGAGATGTTGGACGTGGATCAGGTTTTAGGATTTGAAAATGGGATAGATGAAGTAGAAGAGTCTCTGCTGTCATCCTGCTTTCAGCAATTTCTTTTGTGGCCTTCCGATGATTGTGTCACCTTTGAGTGGACCTTTGTGGTGTTCAAATTGATAGATGCTGCCTGTAATGTTTTACGTAAAGAACCAAACTGTGTGGAGATTAATTGTCTTGGAGAGGATTCAAGAGTCATTGTTGTAGGCGATATACATGGGCAGTTTCATGATTTAATGTTTCTTTTGAAGCATTTAGGAATGCCTTCTGAGAACCAGTTTTATGTTTTCAATGGTAATTATGTTGATGAAGGAGCTTGGGGCATTGAGGTGTTCTTGGTCTTGCTAGCTTGGAAGGTCTTGATGCCTCAGAGAGTGTATCTACTCCGTGGAAATCATGAATCAAGATATTGCACTGAACAATATGGTTTTAAGGAGGAGGTACAGACCAAATATGGTAATCAAAGTGAAGATGTGTACAATAAATTTCTGGAGTGTTTCAAGGAACTTCCATTAGCATCAGTTATTGCCAACCGTGTTTATACTACTCATGGGGGGCTTTTTCGTAGCATTCACGCTGCTGCTTCCGCTTCAGTAAATCCAAAACAGAAAATGACACAAAGGGTGGACCTTGGTTCTTTAGCTGATTTATCTCAAGTTAAAAGAACTTGCATAGATTCTCCACTTGAGGGTCCTAACATATTATTGAGTGACATTCTCTCGTCAAAACCATTTAATAGAGATGGTCTGAGGGTTAATGCAGGTCGGAAATTAGGTTTATGGTGCGGTCCTGATTGCACCGAGGCTTTCTTAAAGCAGCACAATTTGAAGCTGATCATCAGATCACATGAAGGACCTGATGCAAGGGCTGGTAGGGATGACTTTGGTGATATGTTGAATGGATACAGCATAGATCATGATGGCGAGTCAGGAAAGCTATATACACTTTTTAGTGCTCCAGACTACCCGCAGTTTGGGGAAAAAAGATATAACAATGAAGGAGCATATGCAATATTGAAGTGGCCTGATTTTGCAACTCCTTCCTTTCAGTCATTCAAATCAGCAGAAAGACCAATGGTGTATCCTTATCTTGATTTTGATGCTGATGACACGGACTTGAGTAAACTAGACTCTTCTCAAATCGACATAGAGGCCTCAACCTCCACCTTCTCTATTGGAGTGTCCAGCTTCCGGATGGTTCAGGCGGTTCCAAGAGCTCCTTTGGTGGAAGGGCTGCCTCTCCCACCTAACATAGAGGAGCCTCACGCGGCTGCTTATAAGTATTTGTTCGAGCTTGTTGCTGGCCTGAAACAAATGATTGCAACAAGGGAGACGGAGAACAATGCTCGTGTATCGGCTTTGCGAAGTAAAGCTAGGAAACGTAAGGAAAGAGGTCACAATTGA 1914 0.4227 MEHHTEIIKSGCHKILEGINSMSWVNLDDQQVHSLVMMREIARGVVDDRDRKVTKNDVITTLRYSIEKMVCASRDIVHMLSRMSYEGLDDQRMHLVLRMKEIAHGIVDKQPRVAITTSEILVDQVCFVDEGARDSPVVDSIKISNGDILIDEAQSTMHEDEMLDVDQVLGFENGIDEVEESLLSSCFQQFLLWPSDDCVTFEWTFVVFKLIDAACNVLRKEPNCVEINCLGEDSRVIVVGDIHGQFHDLMFLLKHLGMPSENQFYVFNGNYVDEGAWGIEVFLVLLAWKVLMPQRVYLLRGNHESRYCTEQYGFKEEVQTKYGNQSEDVYNKFLECFKELPLASVIANRVYTTHGGLFRSIHAAASASVNPKQKMTQRVDLGSLADLSQVKRTCIDSPLEGPNILLSDILSSKPFNRDGLRVNAGRKLGLWCGPDCTEAFLKQHNLKLIIRSHEGPDARAGRDDFGDMLNGYSIDHDGESGKLYTLFSAPDYPQFGEKRYNNEGAYAILKWPDFATPSFQSFKSAERPMVYPYLDFDADDTDLSKLDSSQIDIEASTSTFSIGVSSFRMVQAVPRAPLVEGLPLPPNIEEPHAAAYKYLFELVAGLKQMIATRETENNARVSALRSKARKRKERGHN 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00092 637 SUPERFAMILY Metallo-dependent phosphatases 206 533 IPR029052 -
Vifa5g00092 637 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 34 622 - -
Vifa5g00092 637 ProSitePatterns Serine/threonine specific protein phosphatases signature. 299 304 IPR006186 GO:0016787
Vifa5g00092 637 SMART pp2a_7 206 526 IPR006186 GO:0016787
Vifa5g00092 637 PRINTS Serine/threonine phosphatase family signature 298 322 IPR006186 GO:0016787
Vifa5g00092 637 PRINTS Serine/threonine phosphatase family signature 235 262 IPR006186 GO:0016787
Vifa5g00092 637 PRINTS Serine/threonine phosphatase family signature 265 292 IPR006186 GO:0016787
Vifa5g00092 637 PRINTS Serine/threonine phosphatase family signature 482 498 IPR006186 GO:0016787
Vifa5g00092 637 PRINTS Serine/threonine phosphatase family signature 335 361 IPR006186 GO:0016787
Vifa5g00092 637 Pfam Calcineurin-like phosphoesterase 235 456 IPR004843 GO:0016787
Vifa5g00092 637 Gene3D - 198 541 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00092 Vifa-Chr5 12461575 12466541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00092 210 448 Calmodulin-binding Proteins AT5G63870 54.065 1.30e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00092 K04460 - gmx:100779241 734.561