Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00086 ATGGATTATTCACCATGGATTAACACTTCCTTAGATCTCAACATTAACCCTCAAAGGTCTCATCAAGAAGCTCTTAAAAATGGAATGGAAAACAATTTTTTCTCATTAGGGTTGAGGAACTCCTCTCCAAAAGAAGAGTCAAGTGATGCTTTGGTGGAAGAGCTGAAACGAGTGAGTGCAGAAAACAAGAAGTTAACAGGAATGTTGACAGAGATGTGTGAGAATTACAACACATTGAGAAACAACATGATGGAATATATGAAGAAGAATCCTGAAACTAAAGAGGTTATAAGTTTTTCAAAGAAAAGAAAATCTGATGAAATAAGCAGTAGTAACAACAATCTAATCGGAGTTAATGGAAGCAACTCCGAAAGTAGTTCAAGTGATGAAGATCAATCCTGCAAGAAACCAAGAGAATTAGAAACTTGCATTAAGGCTAAAGTTTCAAGAGTTTATTTCAAGACAGAAGCATCTGATTCAAGCCTTATTGTGAAAGATGGATATCAATGGAGAAAATATGGACAAAAGGTGACAAGAGATAACCCTTCACCAAGAGCGTATTTCAAATGTTCTTTCGCTCCGAGCTGCACAGTGAAGAAAAAAGTGCAAAGAAGTGTGGATGATCCATCAGTTACAGTTGCAACATATGAAGGAGAACACAATCATCCTCATCCTTCTCAAATGGAGCCAACAAACAACCGTGGTAGGAATCAGATGAATTCGGCAGCACCTTCTTCTGCTGCTGCACCAAGTACAGTTACACTTGATTGGACAAAAAAACCTAAGTGTAGAAATGATTCTTCTTCTAAGAATATGATGATAAATAGTAATTCCAAAATGGAAATACCTCAGATTTTGGTGGAACAAATGGCTAATTCATTGACCAAGGATGTTAAGTTTAGAGCAGCACTTGCAGCTGCTATATCGGGACAAATGTTGCACCAGAATTAA 951 0.3712 MDYSPWINTSLDLNINPQRSHQEALKNGMENNFFSLGLRNSSPKEESSDALVEELKRVSAENKKLTGMLTEMCENYNTLRNNMMEYMKKNPETKEVISFSKKRKSDEISSSNNNLIGVNGSNSESSSSDEDQSCKKPRELETCIKAKVSRVYFKTEASDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCTVKKKVQRSVDDPSVTVATYEGEHNHPHPSQMEPTNNRGRNQMNSAAPSSAAAPSTVTLDWTKKPKCRNDSSSKNMMINSNSKMEIPQILVEQMANSLTKDVKFRAALAAAISGQMLHQN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00086 316 Coils Coil 69 89 - -
Vifa5g00086 316 MobiDBLite consensus disorder prediction 225 252 - -
Vifa5g00086 316 SMART WRKY_cls 164 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g00086 316 FunFam WRKY transcription factor 40 149 226 - -
Vifa5g00086 316 MobiDBLite consensus disorder prediction 109 128 - -
Vifa5g00086 316 Pfam WRKY DNA -binding domain 165 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g00086 316 SUPERFAMILY WRKY DNA-binding domain 162 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g00086 316 MobiDBLite consensus disorder prediction 97 137 - -
Vifa5g00086 316 Gene3D WRKY domain 133 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g00086 316 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 312 IPR044810 GO:0003700
Vifa5g00086 316 MobiDBLite consensus disorder prediction 215 252 - -
Vifa5g00086 316 ProSiteProfiles WRKY domain profile. 159 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00086 Vifa-Chr5 11758997 11760387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00086 4 316 WRKY Transcription Factor Family AT1G80840 51.402 1.13e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g00086 WRKY 2.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00086 - - gsj:114388658 384.415