Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00084 ATGGATCGTATCAATAATTTAACCAAGAAAAGAACCATTCTGTTCAACAAATACGAGATAGGTAAAACTCTAGGTCAAGGAAATTTCGCCAAAGTGTACCATGCAAAAAACGTTAGCACGAACGAGAGCGTGGCTATAAAAGTGATTAAGAAGGAGAAGCTCAAGAAAGAGAGGCTTATGAAACAAATCAAACGCGAAGTTTCTGTTATGAGTCTCGTTCGTCATCCTCACATTGTTGAGTTGAAAGAGGTTATGGCGAACAAAGCCAAAGTGTTCATGGTCGTTGAATACGTCAAAGGCGGCGAGCTTTTCGCCAAAGTTGCGAAAGGGAAGATGAAAGAGGAGATTGCGAGGAAGTATTTTCAACAACTGATTAGTGCTGTTGATTTCTGTCATAGTCGCGGTGTTACGCATCGTGATTTGAAGCCGGAGAATCTGTTGTTGGATGAGAATGAAGATCTCAAGGTTTCGGATTTTGGATTGTCGGCGTTGCCGGATCAACGAAGATCCGATGGGATGCTTGTTACGCCGTGCGGGACTCCGGCGTACGTTGCGCCGGAGGTTTTGAAGAAGATTGGATATGATGGATCGAAGGCTGATATTTGGTCTTGTGGTGTGATTCTGTATGCTTTGCTTTGTGGATATTTGCCTTTTCAAGGGGAGAATGTGATGAGGATTTATAGTAAATCTTTTAAAGCGGATTATGCTTTGCCGGAATGGATTTCGCCGGGGGCCAAGAAATTGATTAAGAATTTGCTTGTTGTTGATCCTGAAAAGAGGTTTTCGATTGTTGATATTATGAAAGATCCTTGGTTTCAAGTAGGGTTTATGAGACCTATTGCTTTTTCGATGAAGGAATCTGCTGTGGATGATAACATTGATTTTAGTGGTGATGATGAAGGGAATTGTGATGGGAGTAATGCTGAGGCTGTGGCTGGGATCGGTACCAAACATGCCAGGAGGCCGTCTTATAATGCGTTTGAGATCATTTCGTCCTTGTCGCATGGATTTGATTTGAGGAATTTGTTTGAGACTAGGAAGAGATCGCCGTCCATGTTTATATCGAAATTGTCTGCCTCCGCGGTGGTTGGGAAGCTGGAGAGTTTAGCCAAGAAGCTGAATTTGAAGGTGACGGGGAAGAAGGATTTCATTGTGAGAATGCAGGGGGCCACGGAGGGGAGGAAGGGGAAATTGGGTATGACGGTGGAGGTGTTTGAGGTTGCGCCGGATGTGGCGGTGGTGGAGTTTTCTAAATCAGCTGGAGATACTCTAGAGTATGTGAAGTTCTGTGAAGATGAAGTTAGACCTTCTCTCAAAGACATTGTGTGGAGTTGGCAGGGTGATTCTCATTCATCCTGCTAA 1362 0.4398 MDRINNLTKKRTILFNKYEIGKTLGQGNFAKVYHAKNVSTNESVAIKVIKKEKLKKERLMKQIKREVSVMSLVRHPHIVELKEVMANKAKVFMVVEYVKGGELFAKVAKGKMKEEIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYSKSFKADYALPEWISPGAKKLIKNLLVVDPEKRFSIVDIMKDPWFQVGFMRPIAFSMKESAVDDNIDFSGDDEGNCDGSNAEAVAGIGTKHARRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKLSASAVVGKLESLAKKLNLKVTGKKDFIVRMQGATEGRKGKLGMTVEVFEVAPDVAVVEFSKSAGDTLEYVKFCEDEVRPSLKDIVWSWQGDSHSSC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00084 453 Gene3D Kinase associated domain 1, KA1 322 444 - -
Vifa5g00084 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vifa5g00084 453 FunFam Non-specific serine/threonine protein kinase 11 311 - -
Vifa5g00084 453 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Vifa5g00084 453 FunFam Non-specific serine/threonine protein kinase 320 443 - -
Vifa5g00084 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 439 - -
Vifa5g00084 453 CDD CIPK_C 325 439 - -
Vifa5g00084 453 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00084 453 Gene3D Transferase(Phosphotransferase) domain 1 8 321 - -
Vifa5g00084 453 SUPERFAMILY Protein kinase-like (PK-like) 14 273 IPR011009 -
Vifa5g00084 453 ProSiteProfiles NAF domain profile. 319 344 IPR018451 GO:0007165
Vifa5g00084 453 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00084 453 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00084 453 Pfam NAF domain 323 378 IPR004041 GO:0007165
Vifa5g00084 453 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Vifa5g00084 453 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00084 Vifa-Chr5 10525660 10527021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00084 13 452 CBL-interacting serine-threonine protein kinases AT5G25110 59.410 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa5g00084 Pkinase 1.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00084 - - gmx:100797846 733.021