Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00083 ATGGCTGTCACAGGTTCTTCTGGTTCTGGGCAGCCGCAATTCATTTCCAGCTCTGGAAACCAAAGCCTTTCCAATTCTCCGCTTATTGACACAACAAATACTGATCAAATTATTGTTCCTGATAGAACAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGCTTATATAGACCCTGGAAACTTTGAGACGGATCTACAATCTGGGGCACAATTTAAATATGAGTTACTTTGGATCATATTGGTGGCATCATGTGCTGCTCTTGTAATTCAATCGATGGCTGCAAATCTTGGGGTGGTCACTGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAATATTCCCGCGTGTCTAACTTCATTCTTTGGTTTATTGCTGAAATCGCGATAGTGGCCTGTGACATCCCAGAAGTGATTGGGACAGCCTTTGCATTAAATATGCTCTTCAACATACCTGTTTGGATTGGTGTCCTACTGACCGGACTCAGCACATTGATGCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTGTTTACAATTGCTGCCTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTGTGAAGGGTCTTTTTGTGCCACAACTAAAAGGGAATGGAGCAACCGGTCTTGCAATTTCACTCCTCGGTGCTATGGTTATGCCTCACAATCTCTTCCTGCACTCGGCATTGGTACTTTCCAGGAAAATACCACGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTCTGTCATTTCTGTAAGTGGTGCCGTTTGCAATTCTTCAAATTTGAATGAAGAAGATCAGATGAACTGTCGGGATTTGGATCTAAACAAAGCTTCCTTCCTACTTAAAAATGTCTTAGGGAAATGGAGTTCAAAACTGTTCGGAATTGCTTTGCTTGCTTCAGGTCAAAGTTCTACGATAACAGGAACTTATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGATTGACACCATGGATTCGAAATATGTTAACCCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGCTCTGCTGGGGCTGGGAAGCTCATCATAATTGCATCTATGATTTTATCATTTGAGCTTCCCTTTGCTTTGGTTCCGCTCCTCAAGTTCACAAGTAGCAAAACCAAGATGGGGGCACATGTTAACTCTACCATGATATCGGCCATTACTTGGATAATCGGTTCACTTATTATGATTATTAATATATACTACTTAATAACTGGTTTCATCAAGCTGCTTCTTCATAGTGACATAGAAATAGTGGCCAAGGTGTTTCTTGGGATGTTAGGATTTTCAGGCATGGCAGTATATTTGGCTGGTATAGCTTATCTTGTACTTCGCAAAAATAAAGAGGGTACACACCTTTTGGCTCTAACAGCACCTGAAAACCAGCAAATGACAAATGAACAAGTAAATGGATCAAGTCTTCCAAGAGAAGACATAGTAAACATGCAATTGCCTCAGAGAAGTAGTCCTGAAGAACTTGACTAA 1632 0.4118 MAVTGSSGSGQPQFISSSGNQSLSNSPLIDTTNTDQIIVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQFKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRAEYSRVSNFILWFIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFWAELGYAKPDAKEVVKGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCNSSNLNEEDQMNCRDLDLNKASFLLKNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLTPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGAHVNSTMISAITWIIGSLIMIINIYYLITGFIKLLLHSDIEIVAKVFLGMLGFSGMAVYLAGIAYLVLRKNKEGTHLLALTAPENQQMTNEQVNGSSLPREDIVNMQLPQRSSPEELD 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00083 543 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g00083 543 Hamap Divalent metal cation transporter MntH [mntH]. 40 456 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PRINTS Natural resistance-associated macrophage protein signature 400 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PRINTS Natural resistance-associated macrophage protein signature 180 201 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PRINTS Natural resistance-associated macrophage protein signature 368 385 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PRINTS Natural resistance-associated macrophage protein signature 340 359 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PRINTS Natural resistance-associated macrophage protein signature 155 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 31 501 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 Pfam Natural resistance-associated macrophage protein 68 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa5g00083 543 NCBIfam Nramp family divalent metal transporter 53 421 - -
Vifa5g00083 543 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 47 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00083 Vifa-Chr5 10223903 10229031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00083 16 536 Inorganic Solute Cotransporters AT1G15960 80.115 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00083 K21398 - gmx:100797298 934.865