Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00073 ATGGATCCCAAACTAGGAGTTCCTTTGTTGCTAGCAATTATGTTCTACAGTAATATATTCACAAGAAATGATATCATTTGCCATGATATGCTGCTAAAAATCTTTGAAATGCTGCCATCACTTGCTTCACACTCAGCAATGACTCCACTTGTAGTTCAAACAATCTTGCCAATGCTTAAAAGAGATGCAAAAGGCTCATTGTATGCTACGGGAACTCGATTGCTATGTCGAACTTGGGAGATCAATGATAGAGCCTTTGGAAGTTTACAAGGTGTCTTGCTTCCAAAAGGTTTCACTGATTTCACATCAGACAGAGCTATCTGTATCAGTTTGGCTGCTTCAATCCGAGATGTTTGCCATAAAAGCCCTGATAGGGGTGTTGATCTTATCTTGACTGTTTCGTCTTGCATTGAGTGTCAAGATCCTATAGTTAAAGCTCTCGGCTTGCAAATCCTTGTCCACCTTTGTGAAGCAGATGTGATTGATTTTTACACTGCATGGGATGTCATTGCAAAGCACGTGCAAGGTTATAAAGGTGATCCTATTATTGCACATAGCACTTGCCTTCTGCTAAGGTGGGGTGCAATGGACGCAGAAGCATATCCAGAAGCATCAAAGAGTGTGCTGTTAAATCTTTGGGATTTAGTTACCTCTAGCCATGGCACAAAGTGGGAAAAAACAAAAATTGCAGCCCTGGAGGCACTTATTCAATATGAAGTGGCGCAACTTGAAAAAAATGTTCCAGATTTTAAGAAAATGAATTTGGAGCTATTCTTTTCTGAGACAAGTCCCACAGTACTCAAGGTTATGGAGGATTTTCATGTCAAGATTATAACATATGAACACATGATTGAAGAAGCTGAAGCACAGTGTGCTTTGTTGAACTCTGAATCATTATGCGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGGGAAATCTTCCTTGGAGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATCATCAAGGAGTTCATGGTTTAGGTCCGGAGTTAGCTTGTCAGATAGTAAAATCAATTGGGGAGAAAGATGTTCTAAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTAAAAATAATATAGGAAAGGACGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCTGATTCAGACTTTGTGCTCAAGGCTCATTCTCAGTATCCATTTCAACGTACTAAGCTCCATCATATATGCGCTGTATACTTCGAATGGCCTTCGGAGAGAACAGATGGATATATCCTTCCATGTATAGCCGAAAGGGATTTACGACGATTTGCCAATTTGTGA 1443 0.3971 MDPKLGVPLLLAIMFYSNIFTRNDIICHDMLLKIFEMLPSLASHSAMTPLVVQTILPMLKRDAKGSLYATGTRLLCRTWEINDRAFGSLQGVLLPKGFTDFTSDRAICISLAASIRDVCHKSPDRGVDLILTVSSCIECQDPIVKALGLQILVHLCEADVIDFYTAWDVIAKHVQGYKGDPIIAHSTCLLLRWGAMDAEAYPEASKSVLLNLWDLVTSSHGTKWEKTKIAALEALIQYEVAQLEKNVPDFKKMNLELFFSETSPTVLKVMEDFHVKIITYEHMIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYREIFLGDGGYVVCYEMAEIENKLGLGRDSLIALSLLLGSDYHQGVHGLGPELACQIVKSIGEKDVLKKFASEGLGWVKKRKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQYPFQRTKLHHICAVYFEWPSERTDGYILPCIAERDLRRFANL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00073 480 Gene3D - 218 343 - -
Vifa5g00073 480 PANTHER FOCADHESIN FAMILY MEMBER 1 283 IPR045163 GO:0060147
Vifa5g00073 480 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 344 479 IPR036279 -
Vifa5g00073 480 Pfam XPG I-region 285 359 IPR006086 GO:0004518
Vifa5g00073 480 Gene3D - 344 405 - -
Vifa5g00073 480 FunFam Flap endonuclease GEN-like 1 344 401 - -
Vifa5g00073 480 Pfam Focadhesin/RST1, DUF3730 27 222 IPR022542 -
Vifa5g00073 480 SMART xpgineu 280 344 IPR006086 GO:0004518
Vifa5g00073 480 SUPERFAMILY PIN domain-like 231 359 IPR029060 -
Vifa5g00073 480 Coils Coil 277 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00073 Vifa-Chr5 9499269 9504053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00073 286 380 Core DNA Replication Machinery Family AT5G26680 34.021 8.75e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00073 - - gmx:100775274 472.626