Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00070 ATGGATCACTTCTTCTCTCTCATTTGCCCTAATTCTCCATCAGTATGGGATGGAAAGGGATTCTCCGAATGTTTTGAAGACATTGTGTTAGGTTTTGCAGTGAATGTAGTGACTATTGTTATGATTATTGTGCTTAGATTTAGTCAAAAGATTGGTGGTCGTCGTGGAGCTCAAAGATCAGACTCTCAGACGCCTCTTCTAGAGAAATTTGTCCTGGATTTTGTACCAGCCATTGGAGCATGCTTCTCAGTTTTGGAAATAATTTTCCTGCTGAAGAAAGAACATGATGGTAGCTATGTTGAATATTATAAGTGGTTATGTAGCTGTTCTGAGTTGTTGCTGTGGGCAAATATCATTCTCTTCACAAAGTGTGCAAGGAGTCATTGCATAATCTTCAACCATGTCTTATGTTTCTGGTGGATTCTGAAACCAATATTGGGGATTTTCCATTTGATAACAAAGTTTTCATCATTGGAGGTTTCAGTATGCATAATGGAAAGCTTAGTTATTCTCTTGAATATATCATTTTGCATAGCTATCAATCTGATCAGGATAAAGAGATTATCTTCCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCCAACGGAGGGGACCTTGAGGAAGGTGAAAATCATGACCTTGGAAATAATGGTAACTTTTGGGATTTGATGACTTTCAAATTCATAAGTCCTGTAATGAATCAAGGGGTGCTAAAGCAATTAGACTCTGACGATCTTCTACCGCTACTACCTGACATGAGTCCTTCTTTCTGTCACGATATAATTTTATCCAGTTGGCGAGAACAGTTGAGTAATAATGGTTCAAACCCTTCCTTGCTTAGAGCACTCTGTAATGCATATGGATGGCAATATCTCCGGCTTGGTTTATTGAAGGTGATAAATGATGGTATTGGTTTCGCGGGACCATTGCTTCTCAATAAGCTGATCAAGTTTCTTCAACAAGGTTCATCAAGTTGGGATGGGTATTTACTTGCACTATCCTTGGGTCTCACATCAATAATTAAATCTTTTTTAGATACACAATATACTTTTCGTCTTTCCAAACTCAAGTTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTATTTGTGAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCGGTGGATGCTGACCGAACTGTTAACTTGTGTAATAGTTTTCATGATATATGGAGCCTGCCTCTACAAATTGGAGTGGCGCTTTATCTTCTGTATACTCAAGTCAAATTTGCATTTGTGTCTGGGTTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAACATTGATTGCACGTGCCACCGAGCAAATGATGAAAGAGAAGGATGAAAGGATTCGTAGGACCGGGGAACTTTTGACTTATATTCGCACATTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGAGACAAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCGTCACTCTTTTCTCTTTGCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTTAATTCATTCCCTTGGGTTATTAATGGATTGATTGATGCCATCATATCCTCCAGACGGCTTAGTAGGTTTCTCTCTTGCTCTGAACATAGACGCAAAGTGGGAGAGAACATTTCATGTTCATCATCATTCCCGAGTGTACAGCCTGATTCCTTACAAGATTTGGCTGTCTCTATCCAAGATGCATGCTGTTCTTGGTCCAGCAGTGATGAAAAAGCATTGAATATGGTGTTGAATCACGTGACTCTTAGCCTGTCAAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCTGGCAAATCATCCATGTTATATTCAATTCTTGGAGAAATGCGGCTTGATCATGGGTCTATTTATTCCAATGGATCTATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGTGACAATATATTATTTGGGAAAAGCTACCATCCTGAAAGGTATACGAATACAATAAAAGCGTGTGCGTTAGATGTTGATATCTCATTGATGGCTGGTGGTGACATGGCATATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGAGTACTGTATCATGACTCGAATGTTATCATGCTCGATGATGTCCTGAGTGCGGTTGATGTACAAGTTGCTCAGTGGATCTTGCACAATGCCATTCTTGGTCCTCTTATGAAGGGAAAAACTAGATTGCTCTGTACCCACAACATTCAGGCAATATCTTCTGCAGATATGATTGTAGTATTGGACAAAGGACACGTAAAGTGGATGGGAAGTTCAACTGACTTCCCAACTTCTTCATATACAGCATTCTCCCCATTGAATGAAATGGATTCAACTTCACATAATCATCAGCAATCTTGCAGCACAAATTCTTCTATAACCAAGGAGCAGTCTCTTCCTGATAGAATTGTCATGCAAGCTCAAGAGGATGCAGAGGATGTAATTGAAGTTGAGTTAAGAAAAGAGGGAAAAGTTGAACTTGGAGTTTATAAGAGTTATGCTGCTTTTACCGGCTGGTTCATTGCCGTGATTATATGTCTATCAGCTATTCTGATGCAAGCTTCGCGTAATGGAAATGATTTATGGCTTTCGTATTGGGTTGATACCACAAGGGAAGATGGTCAAACAAGTTACTCTATGTCTTTCTATCTGGCTATTCTATGTCTCTTTTGTATCATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCGGCAACTAAGGTACACAATAGACTGCTCAGCAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATACTGAATAGGTTATCATCAGATCTTTATACAATCGATGATTCTCTTCCATTTATTATGAACATTCTCTTGGCTAATTTCGTAGGCCTGCTGGGTATTGCAATCATTTTGTCTTATGTACAGGTCTTCTTCTTAGTTTTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTAAGAAGACTGGATAGTGTTTCTCGCTCTCCAATATATACATCTTTCACTGAAACACTTGATGGATCATCAACTATTCGAGCCTTTAAATCTGAGGACTTTTTCTTTACCAAATTTAGTGACCACATAACGTTATATCAGAAGACTTCCTATACAGAAACAGTGGCAAGTCTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATAATCTCATTCATAGCCCTGATGGCTGTTGTCGGATCTCAAGGCAGTCTGCCTATCAGCTTTGGTACCCCCGGACTGGTTGGATTGGCCCTCTCTTACGCAGCTCCAATTGTGTCCCTGCTGGGGAGTTTTCTAACTAGTTTTACTGAAACAGAGAAGGAGATGGTTTCAATTGAAAGAGCACTTCAATATATGGACATTCCTCAAGAAGAACAAGCTGGATCTCTATACTTGAATCCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAACATGTTACTTTGAAATATATGCCATCTTTACCACCTGCACTCTGCAATCTCAGTTTTAAAATTGAAGGAGGAACACAGGTTGGAATAATCGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATTCCCTTTTCCGTCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGATATTCAAAATATTCCTGTGAGAGAACTACGCGCCCATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGACTATTAAGGGATAACCTAGATCCATTCAAAATGAATGATGACTCGAAAATTTGGGATGCACTCGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGTTGGATATTCTTGTAAAGGAAGGGGGAATGTCATTTTCAGTTGGCCAAAGGCAGCTTCTTTGCCTTGCACGGGCACTTCTTAGATCTTCGAAAGTTCTTTGTTTGGATGAATGCACTGCCAGTGTGGACATTCAAACTGCTTCACTGCTGCAAAAAACTATATCCGGAGAATGCAAAGGAATGACGGTGGTCACAATTGCTCACCGGATTTCAACTGTCATAAATATGGACAACATTTTAATTCTTGATCATGGGAACCTGGCTGAACAAGGAAATCCACAGATTCTTCTGAAGGATGGCACCTCTATATTTTCTAGTTTTGTTAAAGCTTCATCTCTGTAA 4410 0.3973 MDHFFSLICPNSPSVWDGKGFSECFEDIVLGFAVNVVTIVMIIVLRFSQKIGGRRGAQRSDSQTPLLEKFVLDFVPAIGACFSVLEIIFLLKKEHDGSYVEYYKWLCSCSELLLWANIILFTKCARSHCIIFNHVLCFWWILKPILGIFHLITKFSSLEVSVCIMESLVILLNISFCIAINLIRIKRLSSKSSLLEDPLLSNGGDLEEGENHDLGNNGNFWDLMTFKFISPVMNQGVLKQLDSDDLLPLLPDMSPSFCHDIILSSWREQLSNNGSNPSLLRALCNAYGWQYLRLGLLKVINDGIGFAGPLLLNKLIKFLQQGSSSWDGYLLALSLGLTSIIKSFLDTQYTFRLSKLKLKLRSSIMTLIYEKCLFVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDIWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLCTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCSEHRRKVGENISCSSSFPSVQPDSLQDLAVSIQDACCSWSSSDEKALNMVLNHVTLSLSKGSFVAVIGEVGSGKSSMLYSILGEMRLDHGSIYSNGSIAYVPQVPWILSGTVRDNILFGKSYHPERYTNTIKACALDVDISLMAGGDMAYIGEKGVNLSGGQRARLALARVLYHDSNVIMLDDVLSAVDVQVAQWILHNAILGPLMKGKTRLLCTHNIQAISSADMIVVLDKGHVKWMGSSTDFPTSSYTAFSPLNEMDSTSHNHQQSCSTNSSITKEQSLPDRIVMQAQEDAEDVIEVELRKEGKVELGVYKSYAAFTGWFIAVIICLSAILMQASRNGNDLWLSYWVDTTREDGQTSYSMSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFTKFSDHITLYQKTSYTETVASLWLSLRLQLLAAFIISFIALMAVVGSQGSLPISFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERALQYMDIPQEEQAGSLYLNPDWPNQGVIEFQHVTLKYMPSLPPALCNLSFKIEGGTQVGIIGRTGAGKSSVLNSLFRLTPICAGSITVDGMDIQNIPVRELRAHLAIVPQSPFLFEGLLRDNLDPFKMNDDSKIWDALEKCHVKEEVEVAGGLDILVKEGGMSFSVGQRQLLCLARALLRSSKVLCLDECTASVDIQTASLLQKTISGECKGMTVVTIAHRISTVINMDNILILDHGNLAEQGNPQILLKDGTSIFSSFVKASSL 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00070 1469 Pfam ABC transporter transmembrane region 911 1159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00070 1469 Pfam ABC transporter transmembrane region 295 559 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00070 1469 Gene3D ABC transporter type 1, transmembrane domain 873 1216 IPR036640 GO:0005524|GO:0016020
Vifa5g00070 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 829 IPR027417 -
Vifa5g00070 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 910 1197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00070 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1456 IPR027417 -
Vifa5g00070 1469 SUPERFAMILY ABC transporter transmembrane region 906 1214 IPR036640 GO:0005524|GO:0016020
Vifa5g00070 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 842 IPR003439 GO:0005524
Vifa5g00070 1469 Gene3D - 1218 1466 IPR027417 -
Vifa5g00070 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 296 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00070 1469 CDD ABC_6TM_MRP7_D1_like 294 579 - -
Vifa5g00070 1469 Gene3D - 601 865 IPR027417 -
Vifa5g00070 1469 FunFam ATP-binding cassette (ABC) transporter, putative 1218 1466 - -
Vifa5g00070 1469 SUPERFAMILY ABC transporter transmembrane region 280 579 IPR036640 GO:0005524|GO:0016020
Vifa5g00070 1469 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524|GO:0016887
Vifa5g00070 1469 Pfam ABC transporter 636 768 IPR003439 GO:0005524
Vifa5g00070 1469 CDD ABCC_MRP_domain1 615 818 - -
Vifa5g00070 1469 FunFam Multidrug resistance-associated protein ABC domain protein 270 588 - -
Vifa5g00070 1469 ProSitePatterns ABC transporters family signature. 1368 1382 IPR017871 GO:0005524|GO:0016887
Vifa5g00070 1469 SMART AAA_5 645 819 IPR003593 GO:0016887
Vifa5g00070 1469 SMART AAA_5 1258 1442 IPR003593 GO:0016887
Vifa5g00070 1469 FunFam ABC transporter C family member 13 598 852 - -
Vifa5g00070 1469 CDD ABCC_MRP_domain2 1230 1449 - -
Vifa5g00070 1469 CDD ABC_6TM_MRP7_D2_like 909 1209 - -
Vifa5g00070 1469 FunFam ABC transporter C family member 5 873 1215 - -
Vifa5g00070 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1465 IPR003439 GO:0005524
Vifa5g00070 1469 Gene3D ABC transporter type 1, transmembrane domain 280 586 IPR036640 GO:0005524|GO:0016020
Vifa5g00070 1469 Pfam ABC transporter 1250 1396 IPR003439 GO:0005524
Vifa5g00070 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 218 1467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00070 Vifa-Chr5 8362723 8376988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00070 635 859 Calmodulin-binding Proteins AT2G36910 27.869 3.84e-20 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00070 K05674 - gmx:100814181 2420.19