Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00069 ATGGATCACTTCTTCTCTCTCATTTGCCCTAATTCTCCATCAGTATGGGATGGAAAGGGATTCTCCGAATGTTTTGAAGACATTGTGTTAGGTTTTGCAGTGAATGTAGTGACTATTGTTATGATTATTGTGCTTAGATTTAGTCAAAAGATTGGTGGTCGTCGTGGAGCTCAAAGATCAGACTCTCAGACGCCTCTTCTAGAGAAATTTGTCCTGGATTTTGTACCAGCCATTGGAGCATGCTTCTCAGTTTTGGAAATAATTTTCCTGCTGAAGAAAGAACATGATGGTAGCTATGTTGAATATTATAAGTGGTTATGTAGCTGTTCTGAGTTGTTGCTGTGGGCAAATATCATTCTCTTCACAAAGTGTGCAAGGAGTCATTGCATAATCTTCAACCATGTCTTATGTTTCTGGTGGATTCTGAAACCAATATTGGGGATTTTCCATTTGATAACAAAGTTTTCATCATTGGAGGTTTCAGTATGCATAATGGAAAGCTTAGTTATTCTCTTGAATATATCATTTTGCATAGCTATCAATCTGATCAGGATAAAGAGATTATCTTCCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCCAACGGAGGGGACCTTGAGGAAGGTGAAAATCATGACCTTGGAAATAATGGTAACTTTTGGGATTTGATGACTTTCAAATTCATAAGTCCTGTAATGAATCAAGGGGTGCTAAAGCAATTAGACTCTGACGATCTTCTACCGCTACTACCTGACATGAGTCCTTCTTTCTGTCACGATATAATTTTATCCAGTTGGCGAGAACAGTTGAGTAATAATGGTTCAAACCCTTCCTTGCTTAGAGCACTCTGTAATGCATATGGATGGCAATATCTCCGGCTTGGTTTATTGAAGGTGATAAATGATGGTATTGGTTTCGCGGGACCATTGCTTCTCAATAAGCTGATCAAGTTTCTTCAACAAGGTTCTGCAACAAGTTCATTTTCAGGTTCATCAAGTTGGGATGGGTATTTACTTGCACTATCCTTGGGTCTCACATCAATAATTAAATCTTTTTTAGATACACAATATACTTTTCGTCTTTCCAAACTCAAGTTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTATTTGTGAACCTAGCAGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCGGTGGATGCTGACCGAACTGTTAACTTGTGTAATAGTTTTCATGATATATGGAGCCTGCCTCTACAAATTGGAGTGGCGCTTTATCTTCTGTATACTCAAGTCAAATTTGCATTTGTGTCTGGGTTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAACATTGATTGCACGTGCCACCGAGCAAATGATGAAAGAGAAGGATGAAAGGATTCGTAGGACCGGGGAACTTTTGACTTATATTCGCACATTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGAGACAAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCGTCACTCTTTTCTCTTTGCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAACGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTTAATTCATTCCCTTGGGTTATTAATGGATTGATTGATGCCATCATATCCTCCAGACGGCTTAGTAGGTTTCTCTCTTGCTCTGAACATAGACGCAAAGTGGGAGAGAACATTTCATGTTCATCATCATTCCCGAGTGTACAGCCTGATTCCTTACAAGATTTGGCTGTCTCTATCCAAGATGCATGCTGTTCTTGGTCCAGCAGTGATGAAAAAGCATTGAATATGGTGTTGAATCACGTGACTCTTAGCCTGTCAAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCTGGCAAATCATCCATGTTATATTCAATTCTTGGAGAAATGCGGCTTGATCATGGGTCTATTTATTCCAATGGATCTATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGTGACAATATATTATTTGGGAAAAGCTACCATCCTGAAAGGTATACGAATACAATAAAAGCGTGTGCGTTAGATGTTGATATCTCATTGATGGCTGGTGGTGACATGGCATATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGAGTACTGTATCATGACTCGAATGTTATCATGCTCGATGATGTCCTGAGTGCGGTTGATGTACAAGTTGCTCAGTGGATCTTGCACAATGCCATTCTTGGTCCTCTTATGAAGGGAAAAACTAGATTGCTCTGTACCCACAACATTCAGGCAATATCTTCTGCAGATATGATTGTAGTATTGGACAAAGGACACGTAAAGTGGATGGGAAGTTCAACTGACTTCCCAACTTCTTCATATACAGCATTCTCCCCATTGAATGAAATGGATTCAACTTCACATAATCATCAGCAATCTTGCAGCACAAATTCTTCTATAACCAAGGAGCAGTCTCTTCCTGATAGAATTGTCATGCAAGCTCAAGAGGATGCAGAGGATGTAATTGAAGTTGAGTTAAGAAAAGAGGGAAAAGTTGAACTTGGAGTTTATAAGAGTTATGCTGCTTTTACCGGCTGGTTCATTGCCGTGATTATATGTCTATCAGCTATTCTGATGCAAGCTTCGCGTAATGGAAATGATTTATGGCTTTCGTATTGGGTTGATACCACAAGGGAAGATGGTCAAACAAGTTACTCTATGTCTTTCTATCTGGCTATTCTATGTCTCTTTTGTATCATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCGGCAACTAAGGTACACAATAGACTGCTCAGCAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATACTGAATAGGTTATCATCAGATCTTTATACAATCGATGATTCTCTTCCATTTATTATGAACATTCTCTTGGCTAATTTCGTAGGCCTGCTGGGTATTGCAATCATTTTGTCTTATGTACAGGTCTTCTTCTTAGTTTTGTTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTAAGAAGACTGGATAGTGTTTCTCGCTCTCCAATATATACATCTTTCACTGAAACACTTGATGGATCATCAACTATTCGAGCCTTTAAATCTGAGGACTTTTTCTTTACCAAATTTAGTGACCACATAACGTTATATCAGAAGACTTCCTATACAGAAACAGTGGCAAGTCTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATAATCTCATTCATAGCCCTGATGGCTGTTGTCGGATCTCAAGGCAGTCTGCCTATCAGCTTTGGTACCCCCGGACTGGTTGGATTGGCCCTCTCTTACGCAGCTCCAATTGTGTCCCTGCTGGGGAGTTTTCTAACTAGTTTTACTGAAACAGAGAAGGAGATGGTTTCAATTGAAAGAGCACTTCAATATATGGACATTCCTCAAGAAGAACAAGCTGGATCTCTATACTTGAATCCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAACATGTTACTTTGAAATATATGCCATCTTTACCACCTGCACTCTGCAATCTCAGTTTTAAAATTGAAGGAGGAACACAGGTTGGAATAATCGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATTCCCTTTTCCGTCTTACCCCAATATGTGCAGGCTCCATCACAGTTGATGGCATGGATATTCAAAATATTCCTGTGAGAGAACTACGCGCCCATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGACTATTAAGGGATAACCTAGATCCATTCAAAATGAATGATGACTCGAAAATTTGGGATGCACTCGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGTTGGATATTCTTGTAAAGGAAGGGGGAATGTCATTTTCAGTTGGCCAAAGGCAGCTTCTTTGCCTTGCACGGGCACTTCTTAGATCTTCGAAAGTTCTTTGTTTGGATGAATGCACTGCCAGTGTGGACATTCAAACTGCTTCACTGCTGCAAAAAACTATATCCGGAGAATGCAAAGGAATGACGGTGGTCACAATTGCTCACCGGATTTCAACTGTCATAAATATGGACAACATTTTAATTCTTGATCATGGGAACCTGGCTGAACAAGGAAATCCACAGATTCTTCTGAAGGATGGCACCTCTATATTTTCTAGTTTTGTTAAAGCTTCATCTCTGTAA 4434 0.3972 MDHFFSLICPNSPSVWDGKGFSECFEDIVLGFAVNVVTIVMIIVLRFSQKIGGRRGAQRSDSQTPLLEKFVLDFVPAIGACFSVLEIIFLLKKEHDGSYVEYYKWLCSCSELLLWANIILFTKCARSHCIIFNHVLCFWWILKPILGIFHLITKFSSLEVSVCIMESLVILLNISFCIAINLIRIKRLSSKSSLLEDPLLSNGGDLEEGENHDLGNNGNFWDLMTFKFISPVMNQGVLKQLDSDDLLPLLPDMSPSFCHDIILSSWREQLSNNGSNPSLLRALCNAYGWQYLRLGLLKVINDGIGFAGPLLLNKLIKFLQQGSATSSFSGSSSWDGYLLALSLGLTSIIKSFLDTQYTFRLSKLKLKLRSSIMTLIYEKCLFVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDIWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPSLFSLCTFGLFALMGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCSEHRRKVGENISCSSSFPSVQPDSLQDLAVSIQDACCSWSSSDEKALNMVLNHVTLSLSKGSFVAVIGEVGSGKSSMLYSILGEMRLDHGSIYSNGSIAYVPQVPWILSGTVRDNILFGKSYHPERYTNTIKACALDVDISLMAGGDMAYIGEKGVNLSGGQRARLALARVLYHDSNVIMLDDVLSAVDVQVAQWILHNAILGPLMKGKTRLLCTHNIQAISSADMIVVLDKGHVKWMGSSTDFPTSSYTAFSPLNEMDSTSHNHQQSCSTNSSITKEQSLPDRIVMQAQEDAEDVIEVELRKEGKVELGVYKSYAAFTGWFIAVIICLSAILMQASRNGNDLWLSYWVDTTREDGQTSYSMSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFTKFSDHITLYQKTSYTETVASLWLSLRLQLLAAFIISFIALMAVVGSQGSLPISFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERALQYMDIPQEEQAGSLYLNPDWPNQGVIEFQHVTLKYMPSLPPALCNLSFKIEGGTQVGIIGRTGAGKSSVLNSLFRLTPICAGSITVDGMDIQNIPVRELRAHLAIVPQSPFLFEGLLRDNLDPFKMNDDSKIWDALEKCHVKEEVEVAGGLDILVKEGGMSFSVGQRQLLCLARALLRSSKVLCLDECTASVDIQTASLLQKTISGECKGMTVVTIAHRISTVINMDNILILDHGNLAEQGNPQILLKDGTSIFSSFVKASSL 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00069 1477 FunFam ABC transporter C family member 5 881 1223 - -
Vifa5g00069 1477 Gene3D - 1226 1474 IPR027417 -
Vifa5g00069 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1234 1464 IPR027417 -
Vifa5g00069 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 837 IPR027417 -
Vifa5g00069 1477 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524|GO:0016887
Vifa5g00069 1477 SUPERFAMILY ABC transporter transmembrane region 280 587 IPR036640 GO:0005524|GO:0016020
Vifa5g00069 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1205 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00069 1477 FunFam ATP-binding cassette subfamily C member 10 271 596 - -
Vifa5g00069 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 850 IPR003439 GO:0005524
Vifa5g00069 1477 FunFam ATP-binding cassette (ABC) transporter, putative 1226 1474 - -
Vifa5g00069 1477 Gene3D ABC transporter type 1, transmembrane domain 881 1224 IPR036640 GO:0005524|GO:0016020
Vifa5g00069 1477 Gene3D ABC transporter type 1, transmembrane domain 267 596 IPR036640 GO:0005524|GO:0016020
Vifa5g00069 1477 FunFam ABC transporter C family member 13 606 860 - -
Vifa5g00069 1477 Pfam ABC transporter transmembrane region 295 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00069 1477 Pfam ABC transporter transmembrane region 919 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00069 1477 CDD ABCC_MRP_domain1 623 826 - -
Vifa5g00069 1477 Gene3D - 609 873 IPR027417 -
Vifa5g00069 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1473 IPR003439 GO:0005524
Vifa5g00069 1477 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Vifa5g00069 1477 Pfam ABC transporter 644 776 IPR003439 GO:0005524
Vifa5g00069 1477 Pfam ABC transporter 1258 1404 IPR003439 GO:0005524
Vifa5g00069 1477 CDD ABC_6TM_MRP7_D2_like 917 1217 - -
Vifa5g00069 1477 SUPERFAMILY ABC transporter transmembrane region 914 1222 IPR036640 GO:0005524|GO:0016020
Vifa5g00069 1477 CDD ABCC_MRP_domain2 1238 1457 - -
Vifa5g00069 1477 SMART AAA_5 1266 1450 IPR003593 GO:0016887
Vifa5g00069 1477 SMART AAA_5 653 827 IPR003593 GO:0016887
Vifa5g00069 1477 CDD ABC_6TM_MRP7_D1_like 294 587 - -
Vifa5g00069 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 218 1475 - -
Vifa5g00069 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 296 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00069 Vifa-Chr5 8362723 8376988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00069 643 867 Calmodulin-binding Proteins AT2G36910 27.869 3.78e-20 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00069 K05674 - gmx:100814181 2412.88