Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00066 ATGCCTTCAAGACAATTCCCTTCAACAAGTTCCAATCTTTTCACCAAACCCAAGTTTCTATTCATAGCACTCACCATTTCAGCTTCTGTGGTGATTGTGTTCTCGATTCTCTACTTTCTTTACCATCTTTGGCATTCTCTTGTTCATAGAGCAAAGACTATACCTTATGATGCTAGTGCTCCTTTGAAGCTGCAGAGGTTCTGTTATAAGGATTTAAAGCTTGCTACCAATGGTTTTGACACTTCCAATCTCATTGGCAAAGGTGGTTCTGGTACTGTTTTTAAGGGTGTACTTAAAGATGGAAAATTTATTGCTATCAAGTGTTTGGATTCTTTGTCTTTGCAATCAGAGAGAGAGTTTCAGAATGAGTTGCAGATTCTTGGAGGGTTGAGATCACCTTTTTTGGTGACCCTTTTGGGCTATTGTGTTGAAAAGAACAAGAGGGTTTTGGTGTATGACTATATGCCTAATGCAAGCTTGCAAGAGTCACTTTTTGGTGATGAGTGTTTTGGTTTGAGTTGGGAGACAAGGTTTTGTGTCATCATGGATGTTGCTAGAGCATTGGAGTTTTTGCATCTTGGATGTGATCCACCTGTGATTCATGGTGATATTAAGCCAAGTAATGTGTTGCTTGATTCCGAGTTTCGCGGGAAGATCTCGGATTTCGGGTTGTCGAGGATTAAGGTGGAGGGTGAGTTTGGAGTTGATTTGTTTAGCCAGGATTTGGGGAAGACTCAGGATCTTTGGAAAAGTCAGGATCTTTCAGGTAATTTGACTGTAGAAACTCCTGTAATTGGTACTCCTGTTGAGAGTGTTAGTGAAGTTGATTTTGCTCTTGCTTTACAAGCTTCCTCTTCGTCGAAAAATAGTAGGACTTGTTTAAATGTTAAAGCTTTGAACTTGAATTCTTCGAATTATAATGCGAATATTGTTGGTGAGAGTGAAAGTAGGAGTTTAGATGCAAAAGGTAAAGAAGTTTCGAGTTTTGATATGTTTGTTCCTTATGATGATGAGTTTTGTAGCAATGATTATAGTAAGGAGTTGGTTGTTAATAATGCTTGTTTGGTTGATGATGAGAAGGAAAACGGGAAACAATGGGGGAAAGATTGGTGGTGGAGACAAGATGGAAGTGGTGAATTGTGTAGTAAAGATTATGTTAAGGAATGGATTGGGAGTCAAATTTGTCCATCAAATGCTGATTGGGATGATGATGATGATGATGGTATTGTGAATACTAAGAAGATCAACATTGAAGAGAAATCCGAGTTGGAAAATTCATGTCCAATAGATAAAGGTAATGATGCAATTGTAAATGGAACTCAAACTCGGTTACATGTTTCTGCGATGGAAGATACTGATAATGGAGTTGTTGATATGAAAGAGGTGAAAGAAAAGAAAAACCAGAAGAAGAAGAAGAAGAAGAATAGGAAAATGCAAGAATGGTGGAAAGAAGAACATCTTGACGAGTTAAGCAAAAAGAAGAGAAACAAGCTGAGAAGTCTTCAAACGAAATGGAAGAAAGGTTTGAAAGTTCCGCATTTTGGCTTTGGTTTAGATAGAAGGTTCTATATTTGTGAAAGTAATAAGAACTATGGAGAGGAAGGAGCGAACGAGAGCGAACAAAATGGCGAGTTTAGCTTCAGAAGAGGTTGGAGGAAAAAAGGCTCGCGCTCAATCGGAAGTGATATGTGGAGTGGCGATCTTTTCAGCCGCGAACTCAGCAGCACGACTAGTATGAGAGGGACATTGTGTTATGTTGCGCCCGAATACGGAGGGTGTGGATTCTTAATGGAGAAAGCTGATATATACAGTTTCGGAGTTTTGATACTTGTGATCATATCAGGTAGAAGACCATTACATGTTCTTGCGTCTCCGATGAAGCTTGAGAAAGCGAATTTGATAAGCTGGTGTAGACATTTGGCTCAGGCTAGTGGTAGTAACATTTTGGAACTAGTTGATGAGAAATTGAAAGATGATTACAATAAGGAACAAGCAAGTTTGTGTATCAACTTGGCTCTTATTTGTTTACAGAAAATTCCAGAGTTGAGACCGGATATCGGTGATATTGTTAAGATTTTGAAAGGGGAGATGGAGCTTCCGCCGCTTCCGTTTGAGTTCTCGCCTTCTCCGCCGTCTAGATTGTACAGCAGATCAAGGAGAAAACAGAAAGGCAGTGCAGAAATATAG 2187 0.3937 MPSRQFPSTSSNLFTKPKFLFIALTISASVVIVFSILYFLYHLWHSLVHRAKTIPYDASAPLKLQRFCYKDLKLATNGFDTSNLIGKGGSGTVFKGVLKDGKFIAIKCLDSLSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYDYMPNASLQESLFGDECFGLSWETRFCVIMDVARALEFLHLGCDPPVIHGDIKPSNVLLDSEFRGKISDFGLSRIKVEGEFGVDLFSQDLGKTQDLWKSQDLSGNLTVETPVIGTPVESVSEVDFALALQASSSSKNSRTCLNVKALNLNSSNYNANIVGESESRSLDAKGKEVSSFDMFVPYDDEFCSNDYSKELVVNNACLVDDEKENGKQWGKDWWWRQDGSGELCSKDYVKEWIGSQICPSNADWDDDDDDGIVNTKKINIEEKSELENSCPIDKGNDAIVNGTQTRLHVSAMEDTDNGVVDMKEVKEKKNQKKKKKKNRKMQEWWKEEHLDELSKKKRNKLRSLQTKWKKGLKVPHFGFGLDRRFYICESNKNYGEEGANESEQNGEFSFRRGWRKKGSRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIISGRRPLHVLASPMKLEKANLISWCRHLAQASGSNILELVDEKLKDDYNKEQASLCINLALICLQKIPELRPDIGDIVKILKGEMELPPLPFEFSPSPPSRLYSRSRRKQKGSAEI 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00066 728 Pfam Protein kinase domain 81 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00066 728 FunFam Receptor-like serine/threonine-protein kinase At4g25390 548 699 - -
Vifa5g00066 728 Coils Coil 456 480 - -
Vifa5g00066 728 Gene3D Transferase(Phosphotransferase) domain 1 155 268 - -
Vifa5g00066 728 Gene3D Transferase(Phosphotransferase) domain 1 553 699 - -
Vifa5g00066 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vifa5g00066 728 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Vifa5g00066 728 SMART serkin_6 79 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00066 728 MobiDBLite consensus disorder prediction 703 728 - -
Vifa5g00066 728 PANTHER OS07G0586332 PROTEIN 11 722 IPR044576 -
Vifa5g00066 728 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Vifa5g00066 728 FunFam putative receptor-like protein kinase At1g80870 155 265 - -
Vifa5g00066 728 ProSiteProfiles Protein kinase domain profile. 79 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00066 728 SUPERFAMILY Protein kinase-like (PK-like) 59 713 IPR011009 -
Vifa5g00066 728 Gene3D Phosphorylase Kinase; domain 1 46 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00066 Vifa-Chr5 8308756 8310942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00066 555 693 Receptor kinase-like Gene Family AT3G58690 31.429 1.66e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vifa5g00066 Pkinase 4.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00066 - - tpra:123899844 1205.66