Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00064 ATGGATATGGCTAATCAAAAAAGGAAAAGCTCTATGGATATGGCTGGTCAAAAAAGAAAAAACACAGGTCGCAAAAAGATTGAGATCAAAAAACTTGACAAAGAATCCAACAAACAAGTCACGTTTTCAAAAAGAAGACAAGGTTTATTCAAAAAAGCAAGTGAACTTTGTATCCTATGTGATGTTCATGCATCCATCATTGTTTTTTCTAGTGCTCACAAACTCTTTTGTTTCGGTCATCCCGATACCGACGCAATTATCAACAGTTATGCCAACGGAACCCTCGAATTCGAGAGATCAAAGTTAGAAGGAAGTTCTTTGATTTACGAAGAGCGTAATAAAAAATATGAAGAAGTGTTGAAGGTGTTGGAGAGGGAGAAGAAGGAACTTGTGGAAGCTGAAAAGTTGGCTAGGGTTTGTAAAAGAGGTGATTGGTGGAATGAAGATACTGATAATATGAATATTGATCAGCTTCAACAATTTATGATTTCTATTTATGAGTTTCGAGGCAAGCTTCTTGAAAAGGATCATCAACGTATGATGAAGCTTGCCATGTTGGAGAATTATTAG 570 0.3614 MDMANQKRKSSMDMAGQKRKNTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCILCDVHASIIVFSSAHKLFCFGHPDTDAIINSYANGTLEFERSKLEGSSLIYEERNKKYEEVLKVLEREKKELVEAEKLARVCKRGDWWNEDTDNMNIDQLQQFMISIYEFRGKLLEKDHQRMMKLAMLENY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00064 189 Gene3D - 35 103 IPR036879 GO:0003677|GO:0046983
Vifa5g00064 189 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Vifa5g00064 189 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g00064 189 FunFam Agamous-like MADS-box protein AGL62 34 99 - -
Vifa5g00064 189 SUPERFAMILY SRF-like 23 93 IPR036879 GO:0003677|GO:0046983
Vifa5g00064 189 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Vifa5g00064 189 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Vifa5g00064 189 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Vifa5g00064 189 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Vifa5g00064 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 78 IPR002100 GO:0003677|GO:0046983
Vifa5g00064 189 MobiDBLite consensus disorder prediction 12 26 - -
Vifa5g00064 189 PANTHER MADS BOX PROTEIN 24 172 - -
Vifa5g00064 189 Coils Coil 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00064 Vifa-Chr5 8143892 8144461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00064 23 173 Type I MADS-box Gene Family AT2G24840 40.385 1.92e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa5g00064 SRF-TF 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00064 - - cam:101502875 202.986