Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00062 ATGGTTTGTCCGGCAGAGGACACACCACGAACAGCAATATGGAACTCCAACGTAGATTTGGTGGTACCAAATTTTCATACACCCAGCGTCTACTTTTACAGACCAAACGGCGCGTCCAATTTCTTCCACGCTAACATTATGAAGGAAGCTCTCAGCAAGGTGCTGGTTCCGTTCTATCCAATGGCAGCTCGTCTCCGCCGTGACGACGACGGTCGTGTTGAGCTTTACTGCGACGGTCAGGGAGTGCTCTTTGTGGAGGCTCATACAACTGCCTCCGTTGATGATTTCGGAGACTTCGCTCCGACGCTTCGGTTGCGTGAGTTAATCCCAGCCGTTGATTACTCCGCTGGTATTGAAACGTATCCACTGTTAGTATTGCAGGTAACATATTTCAAATGTGGAGGAGTTTCCTTAGGAGTTGGTATGCAACACCATGCAGCTGATGGAGCCTCTGGTCTTCACTTCATCAATTCATGGTCTGACATGGCTCGTGCCATTCATGTTTCCATTTCACCATTCATTGACAGAACATTACTCCATGCTCGCCATCCACCTCGACCTGTTTTTGATCACATTGAATACAAACCTCCACCGGCAATGAAAACTGATCATCCCTTACTGCAACCTGCAAAACCAGACTCAAACACTACTGCTGCAGTGTCTATCTTCACATTGACCCGTCACCAACTCAACATCTTGAAGGGTAAGTCCAAAGAAGATGGGAACACTATCACCTATAGCTCTTATGAGATGTTGGCAGGTCATGTATGGAGAAGTGTAAGCAAGGCAAGAGCACTTCCTAATGATCAAGAAACAAAACTGTACATTGCAACTGATGGAAGATCAAGGCTTCAACCTCCACTTCCACAAGGTTACTTTGGCAATGTCATATTCACAACTACTCCAATAGCAGTGGCAGGGGATCTAATGTCAAAACCAACATGGTATGCTGCTAGCAGAATCCATGATGCATTGTTGCGAATGGACAATGATTATTTGAGATCTGCTTTGGACTATCTTGAGCTACAACCTGATTTAAAAGCTCTTGTTCGTGGAGCACATACTTTTAAGTGTCCAAATCTTGGTATTACTAGCTGGGCAAGGTTACCGATTCATGATGCTGACTTTGGTTGGGGAAGACCTATATTCATGGGACCTGGTGGAATTGCATATGAAGGACTATCTTTCATCATTCCAAGCTCAACAAATGATGGTAGCTTGTCTGTGGCAATTGCTCTGCCTCCTGACCAGATGAAGCTGTTTCAGGAATTTTTCTATGATATTTGA 1287 0.4499 MVCPAEDTPRTAIWNSNVDLVVPNFHTPSVYFYRPNGASNFFHANIMKEALSKVLVPFYPMAARLRRDDDGRVELYCDGQGVLFVEAHTTASVDDFGDFAPTLRLRELIPAVDYSAGIETYPLLVLQVTYFKCGGVSLGVGMQHHAADGASGLHFINSWSDMARAIHVSISPFIDRTLLHARHPPRPVFDHIEYKPPPAMKTDHPLLQPAKPDSNTTAAVSIFTLTRHQLNILKGKSKEDGNTITYSSYEMLAGHVWRSVSKARALPNDQETKLYIATDGRSRLQPPLPQGYFGNVIFTTTPIAVAGDLMSKPTWYAASRIHDALLRMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWARLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALPPDQMKLFQEFFYDI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00062 428 Gene3D - 1 196 IPR023213 -
Vifa5g00062 428 Gene3D - 209 428 IPR023213 -
Vifa5g00062 428 FunFam Spermidine hydroxycinnamoyl transferase 1 194 - -
Vifa5g00062 428 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 1 425 - -
Vifa5g00062 428 FunFam Tryptamine hydroxycinnamoyl transferase 206 426 - -
Vifa5g00062 428 Pfam Transferase family 1 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00062 Vifa-Chr5 7707941 7711010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00062 1 428 Monolignol Biosynthesis Gene Families AT5G48930 75.234 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00062 K13065 - gmx:100801923 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00062 5 7707941 7711010 Vifa2g05700 2 1689305809 1689308480 PCT