Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00059 ATGAAGAACCAAAACCTCTGTCGCATGTTTTCAAATCCAGTCAGCGAGACCCAAACCAATATTAGTATTCGTCGTAGTTGCAGCAACGTAACAGAAAACAAAGAAAACACCAATGTCAATGTTCTTCCAAAATCCAAATCATTATCAACTAGAATTGTTAAACCTTCTTCATTACAGTTCTGCATGCAAATCAACGATTCGTCTCACTTTTCCAACTCTCTCAAAATATGGGACTACTCCGATTCCGAAGCAGCTCCCGCTTCCTCTTGGTCCACTTTACCTAACAAGTCCTTGATATGTAGACCCTTACCTACAGATATTGGAAGATGTACATGTGTAATTGTCAAAGAAACAATCCCTCAGGGTCTCTCTGCAACCACCTTCTTCTCTCTATATACCTACGAAGGTCAGGGACGGCAGAATAGGAAACTGGCTGTAGCCTGCCACAAGCGGCGGAGAAATGGAAGATCACAGTTCACAGTAGCTCAGAATGTAAAAGGACTACTTTCTGATTCCGAAGATACTTTCCTCGGGACAGTAACGGCCAACCTCACTGGATCCAAATACAACATTTGGGATCAGAAACATCGTCCTAATTCTAAATCCAATAGTAATCAATCAAATTCAAAGCAGCCTCTTGCTGTTGTTGAGTATGTACCTACAATACCAACATGTACAGGAACTCATAGAAGCATCAAAGCATATATACCTAATCATCAATCTATGTCTTTCAAGAACACTTCACAGGTGCAACATATTAAGGGTTTGCCGCTGAATTGGAAGGGAAAATTGGACAAAGTTCATCAACTATACTCAAAAGATCCACTCTACAACAAGAGTTCAAAACAATTTGAGCTTGACTATAGAGATAAAGGAAGGACAGGACTTCAAATCCAGAAATCAGTTAAAAACTTTCAGCTCACTTTAGAGGAGAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGCAAAATCTAAGTTTGTTATGGACTATAGATATCCTTTGACTGGTTACCAGGCTTTTTCCATATGTTTGGCTTCCATTGATGCAAAACTTTGTTGCATAGTGTAA 1074 0.4013 MKNQNLCRMFSNPVSETQTNISIRRSCSNVTENKENTNVNVLPKSKSLSTRIVKPSSLQFCMQINDSSHFSNSLKIWDYSDSEAAPASSWSTLPNKSLICRPLPTDIGRCTCVIVKETIPQGLSATTFFSLYTYEGQGRQNRKLAVACHKRRRNGRSQFTVAQNVKGLLSDSEDTFLGTVTANLTGSKYNIWDQKHRPNSKSNSNQSNSKQPLAVVEYVPTIPTCTGTHRSIKAYIPNHQSMSFKNTSQVQHIKGLPLNWKGKLDKVHQLYSKDPLYNKSSKQFELDYRDKGRTGLQIQKSVKNFQLTLEENGKQTILQLGRVAKSKFVMDYRYPLTGYQAFSICLASIDAKLCCIV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00059 357 MobiDBLite consensus disorder prediction 192 212 - -
Vifa5g00059 357 Pfam Tub family 100 350 IPR000007 -
Vifa5g00059 357 Gene3D Tubby Protein; Chain A 91 356 IPR025659 -
Vifa5g00059 357 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Vifa5g00059 357 PRINTS Tubby superfamily signature 334 356 IPR000007 -
Vifa5g00059 357 PRINTS Tubby superfamily signature 313 332 IPR000007 -
Vifa5g00059 357 PRINTS Tubby superfamily signature 293 309 IPR000007 -
Vifa5g00059 357 SUPERFAMILY Tubby C-terminal domain-like 87 355 IPR025659 -
Vifa5g00059 357 PANTHER TUBBY-RELATED 39 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00059 Vifa-Chr5 7625265 7626680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00059 53 250 TUB Transcription Factor Family AT1G16070 52.804 6.24e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa5g00059 Tub 8.2e-44 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00059 K19600 - jre:109010979 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00059 5 7625265 7626680 Vifa5g00059 5 7625265 7626680 ECH