Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g00058 | ATGAAGCTCACCGTCAAAACTTTGAAAGGAAGCCATTTCGAAATCAGGGTCCAGCCTTCTGATTCTATAATGGCGGTAAAAAAGAATATTGAAGATATTCAAGGCAAAGATAATTACCCTTGTGGGCAGCAATTGCTGATTCATAATGGAAAGGTTTTGAAAGATGAAACTACATTAGCTGAGAATAAGGTTTCCGAAGACGGATTTCTTGTTGTCATGCTTAGTAAGAGTAAAACCTCGGGCCCTGCTGGAACTTCATCTACTCAGACCGCCAGCAATCCTCCTATAACTGTGCCAACACCAGATTCCGCACCTGTAGTACAAACTCAATCTGTAAACAACAATGCATCCGCGGCAGATGTCCCAATTACAAATGTTACTACAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGGAGTAATCTAGAGCAGACTATTCAACAACTTGTGGACATGGGTGGAGGCAGCTGGGATAGAGATACTGTTAATCGTGCTCTTCGTGCAGCTTTCAATAACCCAGAACGTGCTGTAGATTATTTATATTCTGGGATTCCTGAAACAGCAGAAGTTGCTGTACCGGCTCCTCATTACCCAAATAATCAAACTGAAACTGGTGGTGTCACTACTGGAGCTATTCCCGGGGCCCCTAACTCGTCCCCCTTGAATATGTTTCCGCAGGAGACAATTTCTGGCGCTGGAGCTGGAGCTGGTTCGCTCGACTTCTTGAGGACCAATTCCCAGTTTCAAGCATTACGGACAATGGTACAATCCAATCCACAAATTCTCCAGCCTGTACTTCAAGAGCTCGGAAAGCAAAATCCCAGTCTCCTGAGACTTATTGATGAAAATCATGCTGAGTTTCTCCAGTTGATAAATGAACCCACGGACGGTTCTGAAGGAGATAACTTTGATGAGCCGGAACAAGACATGCCTCATGCTATCAATGTGACACCAGCTGAGCAGGAGGCAATTGGAAGGCTAGAGGGTATGGGATTTGATAGAGCCTTAGTTATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCGGCCAACTACTTACTGGAAAATGCTGCTGATTTTGAGGATTAA | 1101 | 0.4432 | MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTSGPAGTSSTQTASNPPITVPTPDSAPVVQTQSVNNNASAADVPITNVTTDTYGQAASNLVAGSNLEQTIQQLVDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPETAEVAVPAPHYPNNQTETGGVTTGAIPGAPNSSPLNMFPQETISGAGAGAGSLDFLRTNSQFQALRTMVQSNPQILQPVLQELGKQNPSLLRLIDENHAEFLQLINEPTDGSEGDNFDEPEQDMPHAINVTPAEQEAIGRLEGMGFDRALVIEAFLACDRDEQLAANYLLENAADFED | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g00058 | 366 | NCBIfam | UV excision repair protein Rad23 | 1 | 365 | IPR004806 | GO:0006289 | |
Vifa5g00058 | 366 | Gene3D | - | 313 | 363 | - | - | |
Vifa5g00058 | 366 | SUPERFAMILY | XPC-binding domain | 238 | 303 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
Vifa5g00058 | 366 | Gene3D | - | 137 | 187 | - | - | |
Vifa5g00058 | 366 | Gene3D | - | 1 | 80 | - | - | |
Vifa5g00058 | 366 | FunFam | UV excision repair protein RAD23 homolog | 137 | 187 | - | - | |
Vifa5g00058 | 366 | Pfam | XPC-binding domain | 241 | 296 | IPR015360 | GO:0003684|GO:0006289|GO:0043161 | |
Vifa5g00058 | 366 | SMART | CBM | 239 | 282 | IPR006636 | - | |
Vifa5g00058 | 366 | SUPERFAMILY | UBA-like | 140 | 192 | IPR009060 | GO:0005515 | |
Vifa5g00058 | 366 | CDD | Ubl_Rad23 | 1 | 74 | - | - | |
Vifa5g00058 | 366 | PRINTS | DNA repair protein Rad23 signature | 316 | 332 | IPR004806 | GO:0006289 | |
Vifa5g00058 | 366 | PRINTS | DNA repair protein Rad23 signature | 333 | 347 | IPR004806 | GO:0006289 | |
Vifa5g00058 | 366 | PRINTS | DNA repair protein Rad23 signature | 348 | 363 | IPR004806 | GO:0006289 | |
Vifa5g00058 | 366 | PRINTS | DNA repair protein Rad23 signature | 267 | 289 | IPR004806 | GO:0006289 | |
Vifa5g00058 | 366 | FunFam | UV excision repair protein RAD23 homolog | 313 | 361 | - | - | |
Vifa5g00058 | 366 | SMART | ubq_7 | 1 | 75 | IPR000626 | GO:0005515 | |
Vifa5g00058 | 366 | Pfam | Ubiquitin family | 3 | 76 | IPR000626 | GO:0005515 | |
Vifa5g00058 | 366 | SMART | uba_6 | 144 | 184 | IPR015940 | - | |
Vifa5g00058 | 366 | SMART | uba_6 | 322 | 359 | IPR015940 | - | |
Vifa5g00058 | 366 | SUPERFAMILY | Ubiquitin-like | 1 | 85 | IPR029071 | - | |
Vifa5g00058 | 366 | FunFam | UV excision repair protein RAD23 B | 231 | 297 | - | - | |
Vifa5g00058 | 366 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 320 | 360 | IPR015940 | - | |
Vifa5g00058 | 366 | MobiDBLite | consensus disorder prediction | 79 | 103 | - | - | |
Vifa5g00058 | 366 | Pfam | UBA/TS-N domain | 144 | 182 | IPR015940 | - | |
Vifa5g00058 | 366 | Pfam | UBA/TS-N domain | 322 | 357 | IPR015940 | - | |
Vifa5g00058 | 366 | FunFam | UV excision repair protein RAD23 | 1 | 80 | - | - | |
Vifa5g00058 | 366 | CDD | UBA1_Rad23_plant | 138 | 187 | - | - | |
Vifa5g00058 | 366 | Gene3D | - | 231 | 297 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
Vifa5g00058 | 366 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 79 | IPR000626 | GO:0005515 | |
Vifa5g00058 | 366 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 142 | 185 | IPR015940 | - | |
Vifa5g00058 | 366 | SUPERFAMILY | UBA-like | 302 | 363 | IPR009060 | GO:0005515 | |
Vifa5g00058 | 366 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23 | 1 | 355 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g00058 | Vifa-Chr5 | 7618701 | 7623228 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g00058 | 1 | 74 | Cytoplasmic Ribosomal Protein Gene Family | AT3G62250 | 39.189 | 5.94e-06 | 44.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g00058 | K10839 | - | gmx:100804038 | 618.231 |