Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00050 ATGAACACTGATTTGGATGAGGAAACTCCATTGAGTTCTTCTCCACCAGCTACTAGTATTACTACTAAACCCCACTCTTTTCATTTCGATTCATCACTTCCTTTACCCAAATCATCTTCTTCTTTCTTAAACCATTCATCCGCAAGACGAATGAGTAGGAGTATTTATATTGTTTTAATCAAAGCTAAGATCAACCTCTTGTTACCTTTTGGCCCCTTGGCTATCTTCCTACATTATTTCACCGCTAAACATGTTTGGGTTTTCTTCTTCGCTTTGTTGGGTATTGCCCCTTTGGCCGAACGTCTCGGTTATGCTACTGAACAACTTGCCTTCTACACCGGATCAACAGTTGGGGGTTTGCTCAATGCTACATTTGGAAATGCCACTGAAATGATTATATCTATTTACGCTTTGAAAAGCGATATGATTAGGGTTGTTCAGCAATCTTTACTTGGTTCTATCCTCTCTAATATGCTTCTAGTTCTTGGTTGTGCATTCTTTACTGGTGGGATTGTCCACTACCAAAAACTTCAGCTTTTCAATAAGGCTGCTGCTGTTGTCAATTCCGGCTTATTGTTGATGGCTGTAATGGGAATACTCTTTCCTGCTGTGCTTCATTTTACTCACTCTGAGGTTCATCTTGGCAAGTCCGTCTTATCATTATCCAGATTTAGCAGCTGCATCATGCTACTCGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAACACAATTTTTATACTCCAGTTGACGAGGAAGTAGATACAAGCGAAAACACTGACGAGGAGGAAGAACTTGAGTTAACAAAGTGGGAAGCGATAATCTGGCTTGCTATTTTGACAGTATGGGTATCAGTATTGTCTGGATACCTTGTGGATGCCATAGAGGGAGCATCTGAATCCTTGAATATGTCAGTGGCTTTTATTAGCGTCATCTTGCTTCCAATAGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCGTAAAGGACAAGCTAGATATCACAATTGGAGTTGCTGTTGGATCGTCAACCCAAATATCAATGTTTGTGATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGGACCTCAAACTATTTTAAAGGCTTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTTGTACACGTCGACCCTAAAAGTGATGATGACTAA 1284 0.4034 MNTDLDEETPLSSSPPATSITTKPHSFHFDSSLPLPKSSSSFLNHSSARRMSRSIYIVLIKAKINLLLPFGPLAIFLHYFTAKHVWVFFFALLGIAPLAERLGYATEQLAFYTGSTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYQKLQLFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLLAYASYLFFQLRSQHNFYTPVDEEVDTSENTDEEEELELTKWEAIIWLAILTVWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSDDD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00050 427 Gene3D - 114 258 IPR044880 -
Vifa5g00050 427 Gene3D - 261 418 IPR044880 -
Vifa5g00050 427 NCBIfam calcium/proton exchanger 57 417 - -
Vifa5g00050 427 FunFam Vacuolar cation/proton exchanger 115 254 - -
Vifa5g00050 427 FunFam Vacuolar cation/proton exchanger 262 418 - -
Vifa5g00050 427 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g00050 427 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 41 422 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vifa5g00050 427 Pfam Sodium/calcium exchanger protein 84 241 IPR004837 GO:0016020|GO:0055085
Vifa5g00050 427 Pfam Sodium/calcium exchanger protein 275 414 IPR004837 GO:0016020|GO:0055085
Vifa5g00050 427 NCBIfam calcium/proton exchanger 67 417 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00050 Vifa-Chr5 6608674 6613707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00050 53 426 Antiporters AT1G55730 75.733 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00050 K07300 - gmx:100806000 668.692