Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00049 ATGAGCGATAGCATGAAAAACATGGCGGCCACGGGTTCCACATCCTCCAATGGACTCCTCACCGTCACCATTACCAACACCAGCCCTCGCCGCCGTGTCCTCGATTCTAATGACAATAATGACGATGACGAAGACGACCTCCTCATTGATCCCGACGATCCTTTCGACATTACCCAAACCAAAAATGCTCCTCCCGAAACTCTCAAACGTTGGCGACAAGCTGCATTTGTGCTCAATGCGTCTAGGCGTTTTCGATATACTCTTGATTTGAAAAAGGAAGAGGAAAAAGAGCAAAAGAAAAGCATGATTAGAGCTCATGCCCAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCCGGTGAACGTCAACTACTCACAGGTACAACAGTCGCACCCACAACTCCAGGTGCTGACTATACTGTTGGACTTGAACAGCTTGTTTCAATGTCCAAGAATCAAAATATTTCCGCTTTACAACAATATGGAGGGGTTAAAGGCTTATCAAATTTTCTAAAATCAGATCTAGATAAAGGGATTATTGGAGATGAAGCTGATCTATCAAAGAGGAAAAATGCATTTGGAACTAATACATACCCTCGCAAAAAGGGTAAAGGTTTATGGAGGTTTCTATGGGAAGCTTGGCAAGATCTGACACTTATAATATTGATTATAGCAGCTGCAGTGTCATTAGTGCTTGGAATAAAAACAGAGGGATTGAAAGAAGGATGGTTTGATGGAGGAAGCATTGCTTTTGCAGTTATGCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGACAATCTTTGCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAATTGGAGGCCATGAGAGGTGGTAGAACAATAAAAATATCGATATTTGAAATTGTTGTTGGTGATGTACTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGACGGAGTTTTAATTACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGGGAAAGCAAGATCGTTCACAAGGATCAAAAAGCACCATTTTTAATGTCAGGTTGCAAAGTAGCAGACGGAGTTGGTTCTATGCTGGTAACTAGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAACTATCTCAGAAGATACCGGAGAAGAAACTCCCTTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGTATTGTTGGGCTTACTGTAGCTGCAGCTGTTCTTGCAGTCCTCTTGGGAAGATTTTTTTCTGGCCACACGAAAGATTTAACTGGAAAAGTGCAATTTGTTGCTGGAGAGACTAAAATCAGTGACGCTGTTGACGCATGCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCAGAAGGTCTACCTTTAGCAGTTACCTTAACCCTGGCATACTCGATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCTTGCGAAACTATGGGTTCTGCTACGACAATTTGCAGTGATAAAACTGGAACCTTGACCTTAAACCAGATGACTGTAGTTGAGACATATGTTGGGAGGAAGAAATTAAATCCACCAGATGACTCATCAAAATTGCATCCAGAAGTTGTATCTCTGATAAATGAAGGCATAGCGCAAAATACAACTGGCAATATTTTCATTCCTAAGGATGGTGGAGAGACAGAGGTTTCAGGATCTCCTACAGAGAAGGCAATTCTATCTTGGGCTATGAAGTTGGGAATGAATTTTGAACTTATCAGATCAAGTTCAAAGGTTCTCCATGTCTTCCCCTTTAATTCTGAGAAAAAGCGAGGCGGCGTGGCTGTGAAACGGGCGAACTCTGGAGTGCATATACATTGGAAAGGAGCTGCTGAGATAGTTCTAGGAACGTGTACCCAATATATTGATTCAAATGGTCACCCGCAATCTATTGAAGAAGAGAAGGCATTCTTCAAGAAGGCGATTGATGACATGGCTACTCAGAGCTTGCGCTGCGTTGCTATTGCATACAGATCATACGAATTGGACAAAATTCCGTCCAAGGAGGAGGATTTAGACCAATGGACCTTACCCGAACACGAGCTTGTATTACTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCCGGAGTCAAAGACGCTGTAAGATTATGCACTGAGGCAGGTGTTAAGGTACGCATGGTTACTGGGGACAATGTTCAAACAGCAAAAGCAATAGCTTTGGAGTGCGGAATACTGGTTTCAATTGAAGATGCAGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAACAGAAAGGGAACAAGTTGCTATGAAAATAACTGTGATGGGAAGATCATCTCCAAATGACAAGCTTTTGCTCGTGCAAGCACTGCGTAACGGAGGTGAAGTTGTTGCTGTCACAGGAGATGGCACTAATGATGCTCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCGGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTGAAGGTTGTTCGCTGGGGACGTTCTGTTTATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTAAATGTTGCTGCTCTTTCTATAAATGTGGTTGCAGCAGTATCTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATTATGGACACACTTGGGGCTCTTGCTCTGGCTACTGAACCACCGACTGACAGCCTTATGAACAGATCACCAGTAGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGCTTGTACAGGCTCTCTATCAAGTGATTGTTCTTCTGATTCTTAACTTTGGTAGTGCAAGTATTCTACGTCAAGATACTATGACACATACCTTAGAAGTGAAGAATACTATAATTTTCAACGCATTCGTCATGTGCCAGATATTCAATGAATTTAATGCTCGAAAGCCAGAAGGAATGAATGTCTTCAAAGGAGTGACTAAGAACCGTCTCTTTGTGGGAATTGTTGGAATGACCTTTATTCTTCAGATAATCATCATCACGTTCCTTGGGAAGTTCACAACGACAGTGAGACTTAATTGGCAGCAGTGGCTTGCTTGTCTTTGTATTGGGCTGTTCAGCTGGCCACTTGCAATAATTGGAAAATTAATTCCAGTTTCCAAAACACCATGGTCACGACGTGTTGTGAGGGCGTTTAGGCGCATGAAGAAGACACGGACTGCATAA 3288 0.4218 MSDSMKNMAATGSTSSNGLLTVTITNTSPRRRVLDSNDNNDDDEDDLLIDPDDPFDITQTKNAPPETLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERQLLTGTTVAPTTPGADYTVGLEQLVSMSKNQNISALQQYGGVKGLSNFLKSDLDKGIIGDEADLSKRKNAFGTNTYPRKKGKGLWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLKEGWFDGGSIAFAVMLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAMRGGRTIKISIFEIVVGDVLPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFLMSGCKVADGVGSMLVTSVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAAAVLAVLLGRFFSGHTKDLTGKVQFVAGETKISDAVDACIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVETYVGRKKLNPPDDSSKLHPEVVSLINEGIAQNTTGNIFIPKDGGETEVSGSPTEKAILSWAMKLGMNFELIRSSSKVLHVFPFNSEKKRGGVAVKRANSGVHIHWKGAAEIVLGTCTQYIDSNGHPQSIEEEKAFFKKAIDDMATQSLRCVAIAYRSYELDKIPSKEEDLDQWTLPEHELVLLAIVGIKDPCRPGVKDAVRLCTEAGVKVRMVTGDNVQTAKAIALECGILVSIEDAVEPNIIEGKTFRELSETEREQVAMKITVMGRSSPNDKLLLVQALRNGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALSINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMNRSPVGRREPLITNIMWRNLLVQALYQVIVLLILNFGSASILRQDTMTHTLEVKNTIIFNAFVMCQIFNEFNARKPEGMNVFKGVTKNRLFVGIVGMTFILQIIIITFLGKFTTTVRLNWQQWLACLCIGLFSWPLAIIGKLIPVSKTPWSRRVVRAFRRMKKTRTA 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00049 1095 SMART Cation_ATPase_N_a_2 160 234 IPR004014 -
Vifa5g00049 1095 FunFam Calcium-transporting ATPase 63 119 - -
Vifa5g00049 1095 PRINTS P-type cation-transporting ATPase superfamily signature 811 830 - -
Vifa5g00049 1095 PRINTS P-type cation-transporting ATPase superfamily signature 835 847 - -
Vifa5g00049 1095 PRINTS P-type cation-transporting ATPase superfamily signature 704 715 - -
Vifa5g00049 1095 PRINTS P-type cation-transporting ATPase superfamily signature 504 518 - -
Vifa5g00049 1095 PRINTS P-type cation-transporting ATPase superfamily signature 328 342 - -
Vifa5g00049 1095 PRINTS P-type cation-transporting ATPase superfamily signature 726 736 - -
Vifa5g00049 1095 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 511 708 IPR023299 GO:0000166
Vifa5g00049 1095 Gene3D - 514 711 IPR023299 GO:0000166
Vifa5g00049 1095 MobiDBLite consensus disorder prediction 1 64 - -
Vifa5g00049 1095 FunFam Calcium-transporting ATPase 9 plasma membrane-type 358 528 - -
Vifa5g00049 1095 SFLD Haloacid Dehalogenase 486 863 - -
Vifa5g00049 1095 FunFam Calcium-transporting ATPase 260 380 - -
Vifa5g00049 1095 Gene3D - 65 117 - -
Vifa5g00049 1095 SUPERFAMILY HAD-like 502 916 IPR036412 -
Vifa5g00049 1095 Pfam E1-E2 ATPase 284 482 - -
Vifa5g00049 1095 MobiDBLite consensus disorder prediction 1 33 - -
Vifa5g00049 1095 Pfam Cation transporter/ATPase, N-terminus 162 229 IPR004014 -
Vifa5g00049 1095 NCBIfam HAD-IC family P-type ATPase 444 533 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa5g00049 1095 NCBIfam HAD-IC family P-type ATPase 778 891 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa5g00049 1095 NCBIfam calcium-translocating P-type ATPase, PMCA-type 150 1073 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa5g00049 1095 Gene3D - 501 856 IPR023214 -
Vifa5g00049 1095 Pfam Cation transporting ATPase, C-terminus 896 1071 IPR006068 -
Vifa5g00049 1095 Gene3D - 184 380 - -
Vifa5g00049 1095 PRINTS Sodium/potassium-transporting ATPase signature 247 267 - -
Vifa5g00049 1095 PRINTS Sodium/potassium-transporting ATPase signature 497 518 - -
Vifa5g00049 1095 PRINTS Sodium/potassium-transporting ATPase signature 623 641 - -
Vifa5g00049 1095 PANTHER CATION TRANSPORTING ATPASE 104 1073 - -
Vifa5g00049 1095 FunFam Calcium-transporting ATPase 828 1075 - -
Vifa5g00049 1095 FunFam Calcium-transporting ATPase 212 269 - -
Vifa5g00049 1095 Pfam Ca2+-ATPase N terminal autoinhibitory domain 52 95 IPR024750 GO:0005516
Vifa5g00049 1095 ProSitePatterns E1-E2 ATPases phosphorylation site. 506 512 IPR018303 -
Vifa5g00049 1095 Pfam haloacid dehalogenase-like hydrolase 501 825 - -
Vifa5g00049 1095 CDD P-type_ATPase_Ca_PMCA-like 186 944 - -
Vifa5g00049 1095 FunFam Calcium-transporting ATPase 514 711 - -
Vifa5g00049 1095 SUPERFAMILY Calcium ATPase, transduction domain A 284 377 IPR008250 -
Vifa5g00049 1095 Gene3D - 212 1061 - -
Vifa5g00049 1095 SFLD p-type atpase 486 863 IPR044492 -
Vifa5g00049 1095 FunFam Calcium-transporting ATPase 704 856 - -
Vifa5g00049 1095 SUPERFAMILY Calcium ATPase, transmembrane domain M 161 1076 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00049 Vifa-Chr5 6427869 6444756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00049 13 1095 Primary Pumps ATPases AT3G21180 76.129 0.0 1662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00049 K01537 - gmx:100817367 1744.55