Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00048 ATGCAATTAGCTTCCAACTCTGAATCCCAACCCATCCTGAGTGAAATTATTCCCGACGATGACGATATAGAGAATGTTCTGATTCACTCTGATGATGACGATATAGAGAATGTTCTGATTCAGTCTGATGATGAGGATATAGAGAATGTTGTGGTTCAGCATTCAGATCAGCCACAGTGCCGAATATGCCTTGATTTTGAAGGACAAGACTTAATTGCCCCCTGCCATTGCAAAGGTACACAAAAATATGTCCATAGATCATGTTTGGATAACTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCACAGCTCTCTTCCTTTTACGACCCAATGTCCCAAAAGATCGATGGTGGTTGAGGTTGAAATTTCAGTTCCTTGTTGCCAGAGATCATGCTTTCATTTTCATCACTGTTCAACTCGTTGTTGCTTTCTTCGGCCTCCTTATTTACAAATTCTATGGGGATGAACTTAGAGAAATGTTTGGTTATCAACAACATCCATATGGATTTTATACAATGGCTGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCAATAATATGTGGCCAACGAATCAATGAGCGCCACTACCACGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCCGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGCTGGGCCTTTACTAG 744 0.4167 MQLASNSESQPILSEIIPDDDDIENVLIHSDDDDIENVLIQSDDEDIENVVVQHSDQPQCRICLDFEGQDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECTALFLLRPNVPKDRWWLRLKFQFLVARDHAFIFITVQLVVAFFGLLIYKFYGDELREMFGYQQHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00048 247 CDD RING_CH-C4HC3_MARCH 60 107 - -
Vifa5g00048 247 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 180 247 - -
Vifa5g00048 247 Pfam RING-variant domain 60 107 IPR011016 GO:0008270
Vifa5g00048 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 118 IPR013083 -
Vifa5g00048 247 SUPERFAMILY RING/U-box 54 110 - -
Vifa5g00048 247 SMART ringv_2 59 108 IPR011016 GO:0008270
Vifa5g00048 247 ProSiteProfiles Zinc finger RING-CH-type profile. 52 114 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00048 Vifa-Chr5 6422942 6424092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00048 1 206 C3H Transcription Factor Family AT1G50440 56.667 7.94e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00048 - - psat:127087665 426.402