Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00047 ATGGGCGCGCGCTCTAATGGGATTGTGCGCGCACCAACAGCATTTAATAATGTCAAGTTTGTGGTTGTTTTTCTATTATTATTACTACTTTCATATAGAGGCGTGTCTTCTGATGCTGAGGCACTATTGAAGTTCAAGAAATCATTGAAAAATGCAGTGTCCCTCAGCAGTTGGGATCCATCCATAAACCCCAGACCACCATGCTTTGGAAATATTCCAAATTGGGTGGGCTTATTGTGTTTTAATGATAAGGTATGGGGGATACGCCTTGAGAGTATGGGTTTAACCGGTAATATTGATTTGGAATCTGTTGCTTCAATGCCTGCATTACGAACACTTAGTTTGATGAACAATACATTTGTGGGTCCATTGCCTAACCTCAAGATGTTGCCAAATTTGAGGGCCCTTTACTTGTCTTATAACCATTTCTCAGGCTTGATACCCGACAATGCATTTATGGATTTGCATAGGTTGAGGAAATTGTATTTGTCTAATAATGAGTTTACTGGTCAAATCCCATCATCTTTATCTACTTTGCCTATTCTCGTCGTCCTTAGGCTTGACTCAAACAAGTTTAAAGGTGAGATACCCAAATTTGAATCCAAGAATAATAACCTCAAGATTGTCAACTTCTCTAACAATGAATTAGAGGGTCCTATCCCGCCTAATCTAAGAAATTTTGATCCATCTTCCTTTAGTGGAAACATTCTTTTATGTGGGCCACCTTTGACAAATATGTGTGATAATACTATTTTGTCCAGAATAGTTGTTATGAATATTTTACTCACAGTGGTTACGATAGCATTTATAATATCTATTATGGTTTCAATACTTATCATATGTCGCTTGAGGTCCCAAGAGAAACAATTAGGTGATCAGAATCCTTCTACCACTTCACAATTACAGATGCAAGCTTCCAACAAATATGTCAAGCCTCGCGCGGTTTATGTTAAAACCAAAAGTTTGGCCGACCACTATGATCCTAATAGTCCAAAACCAGACCAGTATAGCCATGGTAATTCCAAAAAAGGGGAGCAAGGGAAGCTTATATTCCTGAGGCAAGATGGAATAGTCTTTGATTTACAAGATTTGCTAAGGTCCTCTGCTGAAATTCTAGGGAGTGCCTCCTTTGGGTCATCCTATAAAGCTGTGATTTTGGACGGTCAAGCCATTGTTGTAAAGAGGTATAAGAAAATGAACAATGTGTCGAGACAAGAGTTTTATGAGCATATGAGAAGGATAGGAAACCTCAACCATCCCAATCTTCTACCTCTACTTGCTTTTTATTATACAAGAGAAGAGAAACTTTTGATCTCATCCTTTGTTCATAATGGTTGCTTGGCTAGTCATCTTCATGGTAATCACAACTCACAAAAGCCAGGACTTAATTGGACGACCCGTTTGAAAATTGTGAAAGGTGTATCTAGGGGTTTGTCTTATCTATATAGTGCACTTCCAAGTGTGATTGTTCCTCATGGTCATCTAAAATCTTCTAATGTACTTTTAGATGAATCCTTTGAACCCCTAATTACTGATTATGCCTTGAGTCCATTGATCAATCTTGATCATGCCCAACAAATCATAATGCCTTATAAGTCCCCAGAGTATGCTCAACTTGGTCGCATTACAAAGAAAACAGACGTATGGAGTTTTGGGATTCTAATATTGGAGATCCTAACAGGTAAATTCCCAGAGAACTATATTACACCCAAGTATAATAGTGATTCTGATTTAGCAAGTTGGGTGAATATGATGATTACCGAGAAGCGCACAAGTGATATATTTGACATAGATATGGGAGCAGTCGGAAATAGTAAATCTGAATTGCTCAAACTCTTAAAGATTGGACTTAGTTGTTGTGAGGAGAATGTAGAGAGAAGGTTGGACATCAAAGAGGCTCTTGTGCAGATACAAGACTTGAGAGAGGGTGGGATAATTGATCATATTGGACTTGGAGAATACTCTTCCTCCCTTATCACAAATGAAAGGGATGCTTACAGAGCTGTGTGA 2010 0.3846 MGARSNGIVRAPTAFNNVKFVVVFLLLLLLSYRGVSSDAEALLKFKKSLKNAVSLSSWDPSINPRPPCFGNIPNWVGLLCFNDKVWGIRLESMGLTGNIDLESVASMPALRTLSLMNNTFVGPLPNLKMLPNLRALYLSYNHFSGLIPDNAFMDLHRLRKLYLSNNEFTGQIPSSLSTLPILVVLRLDSNKFKGEIPKFESKNNNLKIVNFSNNELEGPIPPNLRNFDPSSFSGNILLCGPPLTNMCDNTILSRIVVMNILLTVVTIAFIISIMVSILIICRLRSQEKQLGDQNPSTTSQLQMQASNKYVKPRAVYVKTKSLADHYDPNSPKPDQYSHGNSKKGEQGKLIFLRQDGIVFDLQDLLRSSAEILGSASFGSSYKAVILDGQAIVVKRYKKMNNVSRQEFYEHMRRIGNLNHPNLLPLLAFYYTREEKLLISSFVHNGCLASHLHGNHNSQKPGLNWTTRLKIVKGVSRGLSYLYSALPSVIVPHGHLKSSNVLLDESFEPLITDYALSPLINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYITPKYNSDSDLASWVNMMITEKRTSDIFDIDMGAVGNSKSELLKLLKIGLSCCEENVERRLDIKEALVQIQDLREGGIIDHIGLGEYSSSLITNERDAYRAV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00047 669 Gene3D Ribonuclease Inhibitor 35 200 IPR032675 -
Vifa5g00047 669 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 641 IPR046959 -
Vifa5g00047 669 Gene3D Ribonuclease Inhibitor 201 247 IPR032675 -
Vifa5g00047 669 MobiDBLite consensus disorder prediction 323 342 - -
Vifa5g00047 669 SUPERFAMILY Protein kinase-like (PK-like) 369 637 IPR011009 -
Vifa5g00047 669 SUPERFAMILY L domain-like 65 245 - -
Vifa5g00047 669 Gene3D Transferase(Phosphotransferase) domain 1 442 643 - -
Vifa5g00047 669 Gene3D Phosphorylase Kinase; domain 1 338 441 - -
Vifa5g00047 669 Pfam Protein tyrosine and serine/threonine kinase 370 578 IPR001245 GO:0004672|GO:0006468
Vifa5g00047 669 ProSiteProfiles Protein kinase domain profile. 366 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00047 669 SMART LRR_typ_2 155 179 IPR003591 -
Vifa5g00047 669 SMART LRR_typ_2 130 154 IPR003591 -
Vifa5g00047 669 FunFam Pollen receptor-like kinase 1 442 648 - -
Vifa5g00047 669 Pfam Leucine rich repeat N-terminal domain 36 80 IPR013210 -
Vifa5g00047 669 Pfam Leucine rich repeat 131 192 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00047 Vifa-Chr5 6362005 6364306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00047 37 662 Receptor kinase-like Gene Family AT1G50610 47.095 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa5g00047 PK_Tyr_Ser-Thr 9.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00047 - - aprc:113854862 915.22