Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g00044 | ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATCTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAATTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTACCATCATTTCAGGAAACAACATCAGTGAGAAGGCTTATAAGGATGGAAGAACAATGGTGGAGAGTAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCAATCCCGAGACGTGGCATTGGCAACAGCAGCAAAAGCAAAATTACTTCTTCGTGAGCTAAAAACCGTTAAAGCGGATTTAGCATTTGCTAAAGCGCGCTGTGCTCAACTTGAAGAAGAAAATAAATTACTCAGGGAACGAGAAGGAAGCGATAAGGGACTTATCCGTGATGATGATGATCTGGGGAAGGTCATTGTGCATACTTTTGCTAGCATTTCTTCTTTGAATGTAGGGTCGCCACTCTTTTGGATTGGTGTTGGTGTTGGGTTTTCTGCACTATTTTCAGTGGTAGCTTCAAGATTAAAGAAATATGCAATGCAACAAGCTTTAAACACCATAATGGGCCAGATAAATACACAAAATAATAATCCATTTGACAGTGGTGCCTTTTCCCCTGGATCTCCCTTCCCCTTTCCCATGCCTTCAGCTTCAGGGCCCGCTACACCTGCTGGCTTTGCTGGTAATCAATCTCAAGCAACTTCTGCAAGAACTACCTCTCAATCTACTATCACGGTAGACATACCTTCAACCAAAGTAGAAGCAGCAGCCTCGGCCCCAGACATTAATGTTAAAGAAGAAGTGGGAGTAAAGAATGAACCAAAAAAAATCTGGTAA | 1182 | 0.4129 | MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIRIVTIISGNNISEKAYKDGRTMVESKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKQSRDVALATAAKAKLLLRELKTVKADLAFAKARCAQLEEENKLLREREGSDKGLIRDDDDLGKVIVHTFASISSLNVGSPLFWIGVGVGFSALFSVVASRLKKYAMQQALNTIMGQINTQNNNPFDSGAFSPGSPFPFPMPSASGPATPAGFAGNQSQATSARTTSQSTITVDIPSTKVEAAASAPDINVKEEVGVKNEPKKIW | 393 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g00044 | 393 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 7 | 128 | IPR033275 | - | |
| Vifa5g00044 | 393 | SMART | ringv_2 | 15 | 62 | IPR011016 | GO:0008270 | |
| Vifa5g00044 | 393 | SUPERFAMILY | RING/U-box | 13 | 66 | - | - | |
| Vifa5g00044 | 393 | Coils | Coil | 202 | 236 | - | - | |
| Vifa5g00044 | 393 | Pfam | Protein of unknown function (DUF3675) | 67 | 128 | IPR022143 | - | |
| Vifa5g00044 | 393 | CDD | RING_CH-C4HC3_MARCH | 16 | 62 | - | - | |
| Vifa5g00044 | 393 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 8 | 68 | IPR011016 | GO:0008270 | |
| Vifa5g00044 | 393 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 72 | IPR013083 | - | |
| Vifa5g00044 | 393 | MobiDBLite | consensus disorder prediction | 314 | 365 | - | - | |
| Vifa5g00044 | 393 | MobiDBLite | consensus disorder prediction | 338 | 364 | - | - | |
| Vifa5g00044 | 393 | Pfam | RING-variant domain | 16 | 61 | IPR011016 | GO:0008270 | |
| Vifa5g00044 | 393 | MobiDBLite | consensus disorder prediction | 159 | 190 | - | - | |
| Vifa5g00044 | 393 | MobiDBLite | consensus disorder prediction | 150 | 190 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa5g00044 | Vifa-Chr5 | 6150936 | 6154011 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa5g00044 | 16 | 62 | C3H Transcription Factor Family | AT2G37950 | 48.000 | 5.33e-07 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g00044 | - | - | lja:Lj1g3v3244520.2 | 187.193 |