LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00043	ATGTGGGTTCATCATCATAATCATCATCAGCATGGCAAAGTAGGGTCTGGTATTAAAAAGGGAGGTGGTAATGGATTGGTTGCCGTCGCCATTGATAAAGATAAAGGAAGCCAATATGCTCTTAAATGGGCTGCTGATACTCTTCTCACCAGAGGCCAAACCGTTGTTCTATTACATGTTTCTCATCCCACCTCTTCTTCTTCTTCAAGAGGTAACGACGACGCCATTGTATGTAACCTTAACACTACTACTTCAGCATCTCCACAAAGAAACCAAATTGATAATGCTATTAGAGATCTCTTTCTTACTTTCCATTGCTATTGCACACGAAAAGATATCAATTGTCTTGATGTTCTACTTGAGGACAATGATGTTGTCAAGGCAATTACCGAATATGTTGCTTATGCTGCAATTGAAAATTTGGTGGTTGGTGCACCTTCAAGGCATGGATTTATTAGACCCCATTTTTTGTGCAGATTTAAGTCATCAACTACGCCAAGTAGTATATCAAAGGGGGCGCCCGATTTCTGTACCGTTTATGTCTTATCTAAGGGAAAAGTCTCATCTGTTCGGACCGCTTCTCGTCAAGCTCCACATACCTCTCCGCTTCTCGTTCATATAAATAACAATCTAACTAATAATGATATAAATCAACCTGCCGAACAGATATGCTCTAGACGTATGAATTTGAGAGATAGGCCCTCAATGAAACCTCATGGCTGGCAGGATGAATCTATGAAGTCTGCATTTGGAAGAGCCGGAAGAGCCACCAGTGGAATGATATGCATGGACTTCACAGAATCAGATACAGACATATCATTCGTAAGCTCTGGGAGGCCAAGCAGTGCTTGTTCATCCTCTATTTACGATTACATGGACTCCGCTCGAACTTCACGAGTTTCTACCAGTTCAGATCATAGCTTTGGATCCAATCGGTTGGGAATGAAGCTCAATGAGCCTGGGTCACCGGAAACCTCCTTTTCACTTGAAAGCGGTAGAACATCATGTTCATCTCACACCTTGGATGAGGCTGAAGCTGATATGAGGAGGCTGAAGCTTGAGTTAAAACAAACTATGGATATGTACAACACAGCGTGCAGAGAAGCACTTACAGCACAACGTAAGTTAATGGAGATGAGCCATTGGAAATTGGAGGAAGAAAAGAAATTAGAACAGGCAGAATTGGCCCAAGAAGCTGCGTTGGCAATTGCTGAGAGAGAGAAGGCAAGAAGTAAGGCAGCTATGGAAGCAGCTGAAGCAGCTAGAAAGATTGCAAATGTGGAATTAAAACGAAGATCAACTGTTGAAGTAAAATCTTCTAAAGAAACAGAGGAACTGAGGAAGCTATTGGATAATTTAGGCCAAACTGATGTAAGATATAGGAGATACTCTATTGACGAGATTGAAGTAGCGACACACACGTTTTCTGAAAAACAAATAATTGGGGAAGGTGGTTACGGCCCTGTTTATAAATGTTACCTTGATCACACCCCAGTGGCCGTCAAGGTTTTACGTCCAGATGCAGCTCAAGGGAAATCTCAGTTTCAACAAGAGGTTGACATACTGAGTTGTATGCGTCACCCGAATTTGGTGCTTCTTTTAGGAGCGTGTCCGGAGTATGGCATATTGGTTTATGAATATATGGCAAATGGAAGCTTAGACGAATGTCTGACTCGAAAAAAGGATAAGGTTCTGTGTTGGCAGTTGAGGTTTCGAATTGCTGCAGAGATAGCCACAGGATTGTTATTCCTACATCAGACCAAACCTGAACCTCTGGTGCATCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAAAATTATGTATGTAAAATTAGTGATGTTGGATTGGCAAGACTGGTCCCTGCAGTGGCTGATAATGTAACACAATGTCGCATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGTGTGAAGTCAGATGTTTATTCTCTAGGGATCATATTTCTTCAATTATTGACTGGCAGGCATCCAATGGGTTTAGCACACCATTCAGAGCAGGCGATTGAGAAGGGAACATTTGAGAACATGCTTGACCCATGTGTCTCTAACTGGCCTGTTGAACAAGCCCACACCCTTGCGCATATAGCGGTCCAGTGTGCACAATTGAGGCGAAAGGATCGGCCAGACCTTGCAAAAGAAGTCATGCCTAAGCTTGCTAAACTTAGAGAGTTTGCTGATGAAAATATGGGTCCCATATTTTTAGGAGGAGGCATGACTTATATTAATACCATAACTTCTCCCAATCATAGTCAAGTTTCAGTGCAGCAGGAGGTCATGAGCGACCCACAATTATTAATAAATTCAGGAAGTTCAATAGGTACACCACCAACTCCTACATCTCCAACAACGGAAGAAAATCCTTAA	2418	0.4239	MWVHHHNHHQHGKVGSGIKKGGGNGLVAVAIDKDKGSQYALKWAADTLLTRGQTVVLLHVSHPTSSSSSRGNDDAIVCNLNTTTSASPQRNQIDNAIRDLFLTFHCYCTRKDINCLDVLLEDNDVVKAITEYVAYAAIENLVVGAPSRHGFIRPHFLCRFKSSTTPSSISKGAPDFCTVYVLSKGKVSSVRTASRQAPHTSPLLVHINNNLTNNDINQPAEQICSRRMNLRDRPSMKPHGWQDESMKSAFGRAGRATSGMICMDFTESDTDISFVSSGRPSSACSSSIYDYMDSARTSRVSTSSDHSFGSNRLGMKLNEPGSPETSFSLESGRTSCSSHTLDEAEADMRRLKLELKQTMDMYNTACREALTAQRKLMEMSHWKLEEEKKLEQAELAQEAALAIAEREKARSKAAMEAAEAARKIANVELKRRSTVEVKSSKETEELRKLLDNLGQTDVRYRRYSIDEIEVATHTFSEKQIIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLDECLTRKKDKVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPAVADNVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHSEQAIEKGTFENMLDPCVSNWPVEQAHTLAHIAVQCAQLRRKDRPDLAKEVMPKLAKLREFADENMGPIFLGGGMTYINTITSPNHSQVSVQQEVMSDPQLLINSGSSIGTPPTPTSPTTEENP	805

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00043	805	Pfam	Protein kinase domain	475	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00043	805	Pfam	Universal stress protein family	27	153	IPR006016	-
	Vifa5g00043	805	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	592	604	IPR008271	GO:0004672\|GO:0006468
	Vifa5g00043	805	CDD	STK_N	26	185	-	-
	Vifa5g00043	805	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	27	153	-	-
	Vifa5g00043	805	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	448	547	-	-
	Vifa5g00043	805	Gene3D	Phosphorylase Kinase; domain 1	428	547	-	-
	Vifa5g00043	805	Coils	Coil	341	361	-	-
	Vifa5g00043	805	SUPERFAMILY	Protein kinase-like (PK-like)	458	729	IPR011009	-
	Vifa5g00043	805	MobiDBLite	consensus disorder prediction	321	339	-	-
	Vifa5g00043	805	MobiDBLite	consensus disorder prediction	300	342	-	-
	Vifa5g00043	805	PANTHER	OS02G0152300 PROTEIN	27	782	-	-
	Vifa5g00043	805	SMART	serkin_6	475	743	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00043	805	ProSiteProfiles	Protein kinase domain profile.	475	736	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00043	805	MobiDBLite	consensus disorder prediction	783	805	-	-
	Vifa5g00043	805	Gene3D	HUPs	26	161	IPR014729	-
	Vifa5g00043	805	Coils	Coil	401	421	-	-
	Vifa5g00043	805	Gene3D	Transferase(Phosphotransferase) domain 1	548	748	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g00043	Vifa-Chr5	6107528	6110798	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g00043	1	781	Receptor kinase-like Gene Family	AT1G78940	55.044	0.0	819

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vifa5g00043		PK_Tyr_Ser-Thr	4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00043	-		-	gmx:100801601	998.423