LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00042	ATGTGGGTTCATCATCATAATCATCATCAGCATGGCAAAGTAGGGTCTGGTATTAAAAAGGGAGGTGGTAATGGATTGGTTGCCGTCGCCATTGATAAAGATAAAGGAAGCCAATATGCTCTTAAATGGGCTGCTGATACTCTTCTCACCAGAGGCCAAACCGTTGTTCTATTACATGTTTCTCATCCCACCTCTTCTTCTTCTTCAAGAGGTAACGACGACGCCATTGTATGTAACCTTAACACTACTACTTCAGCATCTCCACAAAGAAACCAAATTGATAATGCTATTAGAGATCTCTTTCTTACTTTCCATTGCTATTGCACACGAAAAGATATCAATTGTCTTGATGTTCTACTTGAGGACAATGATGTTGTCAAGGCAATTACCGAATATGTTGCTTATGCTGCAATTGAAAATTTGGTGGTTGGTGCACCTTCAAGGCATGGATTTATTAGATTTAAGTCATCAACTACGCCAAGTAGTATATCAAAGGGGGCGCCCGATTTCTGTACCGTTTATGTCTTATCTAAGGGAAAAGTCTCATCTGTTCGGACCGCTTCTCGTCAAGCTCCACATACCTCTCCGCTTCTCGTTCATATAAATAACAATCTAACTAATAATGATATAAATCAACCTGCCGAACAGATATGCTCTAGACGTATGAATTTGAGAGATAGGCCCTCAATGAAACCTCATGGCTGGCAGGATGAATCTATGAAGTCTGCATTTGGAAGAGCCGGAAGAGCCACCAGTGGAATGATATGCATGGACTTCACAGAATCAGATACAGACATATCATTCGTAAGCTCTGGGAGGCCAAGCAGTGCTTGTTCATCCTCTATTTACGATTACATGGACTCCGCTCGAACTTCACGAGTTTCTACCAGTTCAGATCATAGCTTTGGATCCAATCGGTTGGGAATGAAGCTCAATGAGCCTGGGTCACCGGAAACCTCCTTTTCACTTGAAAGCGGTAGAACATCATGTTCATCTCACACCTTGGATGAGGCTGAAGCTGATATGAGGAGGCTGAAGCTTGAGTTAAAACAAACTATGGATATGTACAACACAGCGTGCAGAGAAGCACTTACAGCACAACGTAAGTTAATGGAGATGAGCCATTGGAAATTGGAGGAAGAAAAGAAATTAGAACAGGCAGAATTGGCCCAAGAAGCTGCGTTGGCAATTGCTGAGAGAGAGAAGGCAAGAAGTAAGGCAGCTATGGAAGCAGCTGAAGCAGCTAGAAAGATTGCAAATGTGGAATTAAAACGAAGATCAACTGTTGAAGTAAAATCTTCTAAAGAAACAGAGGAACTGAGGAAGCTATTGGATAATTTAGGCCAAACTGATGTAAGATATAGGAGATACTCTATTGACGAGATTGAAGTAGCGACACACACGTTTTCTGAAAAACAAATAATTGGGGAAGGTGGTTACGGCCCTGTTTATAAATGTTACCTTGATCACACCCCAGTGGCCGTCAAGGTTTTACGTCCAGATGCAGCTCAAGGGAAATCTCAGTTTCAACAAGAGGTTGACATACTGAGTTGTATGCGTCACCCGAATTTGGTGCTTCTTTTAGGAGCGTGTCCGGAGTATGGCATATTGGTTTATGAATATATGGCAAATGGAAGCTTAGACGAATGTCTGACTCGAAAAAAGGATAAGGTTCTGTGTTGGCAGTTGAGGTTTCGAATTGCTGCAGAGATAGCCACAGGATTGTTATTCCTACATCAGACCAAACCTGAACCTCTGGTGCATCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAAAATTATGTATGTAAAATTAGTGATGTTGGATTGGCAAGACTGGTCCCTGCAGTGGCTGATAATGTAACACAATGTCGCATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGTGTGAAGTCAGATGTTTATTCTCTAGGGATCATATTTCTTCAATTATTGACTGGCAGGCATCCAATGGGTTTAGCACACCATTCAGAGCAGGCGATTGAGAAGGGAACATTTGAGAACATGCTTGACCCATGTGTCTCTAACTGGCCTGTTGAACAAGCCCACACCCTTGCGCATATAGCGGTCCAGTGTGCACAATTGAGGCGAAAGGATCGGCCAGACCTTGCAAAAGAAGTCATGCCTAAGCTTGCTAAACTTAGAGAGTTTGCTGATGAAAATATGGGTCCCATATTTTTAGGAGGAGGCATGACTTATATTAATACCATAACTTCTCCCAATCATAGTCAAGTTTCAGTGCAGCAGGAGGTCATGAGCGACCCACAATTATTAATAAATTCAGGAAGTTCAATAGGTACACCACCAACTCCTACATCTCCAACAACGGAAGAAAATCCTTAA	2400	0.4238	MWVHHHNHHQHGKVGSGIKKGGGNGLVAVAIDKDKGSQYALKWAADTLLTRGQTVVLLHVSHPTSSSSSRGNDDAIVCNLNTTTSASPQRNQIDNAIRDLFLTFHCYCTRKDINCLDVLLEDNDVVKAITEYVAYAAIENLVVGAPSRHGFIRFKSSTTPSSISKGAPDFCTVYVLSKGKVSSVRTASRQAPHTSPLLVHINNNLTNNDINQPAEQICSRRMNLRDRPSMKPHGWQDESMKSAFGRAGRATSGMICMDFTESDTDISFVSSGRPSSACSSSIYDYMDSARTSRVSTSSDHSFGSNRLGMKLNEPGSPETSFSLESGRTSCSSHTLDEAEADMRRLKLELKQTMDMYNTACREALTAQRKLMEMSHWKLEEEKKLEQAELAQEAALAIAEREKARSKAAMEAAEAARKIANVELKRRSTVEVKSSKETEELRKLLDNLGQTDVRYRRYSIDEIEVATHTFSEKQIIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLDECLTRKKDKVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPAVADNVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHSEQAIEKGTFENMLDPCVSNWPVEQAHTLAHIAVQCAQLRRKDRPDLAKEVMPKLAKLREFADENMGPIFLGGGMTYINTITSPNHSQVSVQQEVMSDPQLLINSGSSIGTPPTPTSPTTEENP	799

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00042	799	ProSiteProfiles	Protein kinase domain profile.	469	730	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00042	799	CDD	STK_N	26	179	-	-
	Vifa5g00042	799	SUPERFAMILY	Protein kinase-like (PK-like)	452	723	IPR011009	-
	Vifa5g00042	799	Pfam	Protein kinase domain	469	721	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00042	799	Pfam	Universal stress protein family	27	162	IPR006016	-
	Vifa5g00042	799	Gene3D	Transferase(Phosphotransferase) domain 1	542	742	-	-
	Vifa5g00042	799	PANTHER	OS02G0152300 PROTEIN	27	776	-	-
	Vifa5g00042	799	Gene3D	Phosphorylase Kinase; domain 1	422	541	-	-
	Vifa5g00042	799	Coils	Coil	335	355	-	-
	Vifa5g00042	799	MobiDBLite	consensus disorder prediction	315	333	-	-
	Vifa5g00042	799	Gene3D	HUPs	26	176	IPR014729	-
	Vifa5g00042	799	MobiDBLite	consensus disorder prediction	294	336	-	-
	Vifa5g00042	799	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	586	598	IPR008271	GO:0004672\|GO:0006468
	Vifa5g00042	799	SMART	serkin_6	469	737	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00042	799	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	27	175	-	-
	Vifa5g00042	799	Coils	Coil	395	415	-	-
	Vifa5g00042	799	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	442	541	-	-
	Vifa5g00042	799	MobiDBLite	consensus disorder prediction	777	799	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g00042	Vifa-Chr5	6107528	6110798	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g00042	1	775	Receptor kinase-like Gene Family	AT1G78940	55.082	0.0	821

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vifa5g00042		PK_Tyr_Ser-Thr	4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00042	-		-	gmx:100801601	1004.97