LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00041	ATGTGGGTTCATCATCATAATCATCATCAGCATGGCAAAGTAGGGTCTGGTATTAAAAAGGGAGGTGGTAATGGATTGGTTGCCGTCGCCATTGATAAAGATAAAGGAAGCCAATATGCTCTTAAATGGGCTGCTGATACTCTTCTCACCAGAGGCCAAACCGTTGTTCTATTACATGTTTCTCATCCCACCTCTTCTTCTTCTTCAAGAGGTAACGACGACGCCATTGTATGTAACCTTAACACTACTACTTCAGCATCTCCACAAAGAAACCAAATTGATAATGCTATTAGAGATCTCTTTCTTACTTTCCATTGCTATTGCACACGAAAAGATATCAATTGTCTTGATGTTCTACTTGAGGACAATGATGTTGTCAAGGCAATTACCGAATATGTTGCTTATGCTGCAATTGAAAATTTGGTGGTTGGTGCACCTTCAAGGCATGGATTTATTAGATTTAAGTCATCAACTACGCCAAGTAGTATATCAAAGGGGGCGCCCGATTTCTGTACCGTTTATGTCTTATCTAAGGGAAAAGTCTCATCTGTTCGGACCGCTTCTCGTCAAGCTCCACATACCTCTCCGCTTCTCGTTCATATAAATAACAATCTAACTAATAATGATATAAATCAACCTGCCGAACAGATATGCTCTAGACATAGGCCCTCAATGAAACCTCATGGCTGGCAGGATGAATCTATGAAGTCTGCATTTGGAAGAGCCGGAAGAGCCACCAGTGGAATGATATGCATGGACTTCACAGAATCAGATACAGACATATCATTCGTAAGCTCTGGGAGGCCAAGCAGTGCTTGTTCATCCTCTATTTACGATTACATGGACTCCGCTCGAACTTCACGAGTTTCTACCAGTTCAGATCATAGCTTTGGATCCAATCGGTTGGGAATGAAGCTCAATGAGCCTGGGTCACCGGAAACCTCCTTTTCACTTGAAAGCGGTAGAACATCATGTTCATCTCACACCTTGGATGAGGCTGAAGCTGATATGAGGAGGCTGAAGCTTGAGTTAAAACAAACTATGGATATGTACAACACAGCGTGCAGAGAAGCACTTACAGCACAACGTAAGTTAATGGAGATGAGCCATTGGAAATTGGAGGAAGAAAAGAAATTAGAACAGGCAGAATTGGCCCAAGAAGCTGCGTTGGCAATTGCTGAGAGAGAGAAGGCAAGAAGTAAGGCAGCTATGGAAGCAGCTGAAGCAGCTAGAAAGATTGCAAATGTGGAATTAAAACGAAGATCAACTGTTGAAGTAAAATCTTCTAAAGAAACAGAGGAACTGAGGAAGCTATTGGATAATTTAGGCCAAACTGATGTAAGATATAGGAGATACTCTATTGACGAGATTGAAGTAGCGACACACACGTTTTCTGAAAAACAAATAATTGGGGAAGGTGGTTACGGCCCTGTTTATAAATGTTACCTTGATCACACCCCAGTGGCCGTCAAGGTTTTACGTCCAGATGCAGCTCAAGGGAAATCTCAGTTTCAACAAGAGGTTGACATACTGAGTTGTATGCGTCACCCGAATTTGGTGCTTCTTTTAGGAGCGTGTCCGGAGTATGGCATATTGGTTTATGAATATATGGCAAATGGAAGCTTAGACGAATGTCTGACTCGAAAAAAGGATAAGGTTCTGTGTTGGCAGTTGAGGTTTCGAATTGCTGCAGAGATAGCCACAGGATTGTTATTCCTACATCAGACCAAACCTGAACCTCTGGTGCATCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAAAATTATGTATGTAAAATTAGTGATGTTGGATTGGCAAGACTGGTCCCTGCAGTGGCTGATAATGTAACACAATGTCGCATGACATCGGCAGCGGGAACATTCTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGTGTGAAGTCAGATGTTTATTCTCTAGGGATCATATTTCTTCAATTATTGACTGGCAGGCATCCAATGGGTTTAGCACACCATTCAGAGCAGGCGATTGAGAAGGGAACATTTGAGAACATGCTTGACCCATGTGTCTCTAACTGGCCTGTTGAACAAGCCCACACCCTTGCGCATATAGCGGTCCAGTGTGCACAATTGAGGCGAAAGGATCGGCCAGACCTTGCAAAAGAAGTCATGCCTAAGCTTGCTAAACTTAGAGAGTTTGCTGATGAAAATATGGGTCCCATATTTTTAGGAGGAGGCATGACTTATATTAATACCATAACTTCTCCCAATCATAGTCAAGTTTCAGTGCAGCAGGAGGTCATGAGCGACCCACAATTATTAATAAATTCAGGAAGTTCAATAGGTACACCACCAACTCCTACATCTCCAACAACGGAAGAAAATCCTTAA	2385	0.4243	MWVHHHNHHQHGKVGSGIKKGGGNGLVAVAIDKDKGSQYALKWAADTLLTRGQTVVLLHVSHPTSSSSSRGNDDAIVCNLNTTTSASPQRNQIDNAIRDLFLTFHCYCTRKDINCLDVLLEDNDVVKAITEYVAYAAIENLVVGAPSRHGFIRFKSSTTPSSISKGAPDFCTVYVLSKGKVSSVRTASRQAPHTSPLLVHINNNLTNNDINQPAEQICSRHRPSMKPHGWQDESMKSAFGRAGRATSGMICMDFTESDTDISFVSSGRPSSACSSSIYDYMDSARTSRVSTSSDHSFGSNRLGMKLNEPGSPETSFSLESGRTSCSSHTLDEAEADMRRLKLELKQTMDMYNTACREALTAQRKLMEMSHWKLEEEKKLEQAELAQEAALAIAEREKARSKAAMEAAEAARKIANVELKRRSTVEVKSSKETEELRKLLDNLGQTDVRYRRYSIDEIEVATHTFSEKQIIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLDECLTRKKDKVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPAVADNVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRHPMGLAHHSEQAIEKGTFENMLDPCVSNWPVEQAHTLAHIAVQCAQLRRKDRPDLAKEVMPKLAKLREFADENMGPIFLGGGMTYINTITSPNHSQVSVQQEVMSDPQLLINSGSSIGTPPTPTSPTTEENP	794

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00041	794	Coils	Coil	330	350	-	-
	Vifa5g00041	794	MobiDBLite	consensus disorder prediction	310	328	-	-
	Vifa5g00041	794	CDD	STK_N	26	179	-	-
	Vifa5g00041	794	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	581	593	IPR008271	GO:0004672\|GO:0006468
	Vifa5g00041	794	Gene3D	HUPs	26	176	IPR014729	-
	Vifa5g00041	794	PANTHER	OS02G0152300 PROTEIN	27	771	-	-
	Vifa5g00041	794	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	437	536	-	-
	Vifa5g00041	794	SUPERFAMILY	Protein kinase-like (PK-like)	447	718	IPR011009	-
	Vifa5g00041	794	Coils	Coil	390	410	-	-
	Vifa5g00041	794	MobiDBLite	consensus disorder prediction	772	794	-	-
	Vifa5g00041	794	SMART	serkin_6	464	732	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00041	794	Gene3D	Transferase(Phosphotransferase) domain 1	537	737	-	-
	Vifa5g00041	794	ProSiteProfiles	Protein kinase domain profile.	464	725	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00041	794	Pfam	Protein kinase domain	464	716	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa5g00041	794	Gene3D	Phosphorylase Kinase; domain 1	417	536	-	-
	Vifa5g00041	794	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	27	175	-	-
	Vifa5g00041	794	Pfam	Universal stress protein family	27	162	IPR006016	-
	Vifa5g00041	794	MobiDBLite	consensus disorder prediction	289	328	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g00041	Vifa-Chr5	6107528	6110798	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g00041	1	770	Receptor kinase-like Gene Family	AT1G78940	55.542	0.0	820

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Vifa5g00041		PK_Tyr_Ser-Thr	3.9e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00041	-		-	gmx:100801601	987.638