Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00039 ATGTTGGTTGGTATAGAGAGGAATTCCTTTGTTCCAGTTGCACACAGGATAGAGCGGCGTTTTCCGGTTAAAAGCAAGTTCCCCAATTTGAGAAAACCTGGAAAGTTCCATATACATTACTTTTATGACGATAAAAGGACGACTCCAAATAATTGGCAGCAGCGTTGTCGTTCGGGTTTGGGAGAGTCCCCACTCTCTGACTGGGAACTGCGGGAAGGCCGTATGGCGGTTTCGTCTTTCCTCCAACAAATGGGCCTCTCATTGGAGGAATCCGATTCAATCGCATCAAACTCCCCATCTTATCTCAACATGTTGGTGGAAGGTGTTAGGGATTTGGAGCTGTTAGATCATGGTGGTAATAGGGATTTGGAGCTGTTAGATCATGCTAATAACAACGCTCTCTTCGATTTCAACTTGAACTACACAGATAAGATTCTTCACATTGCTGCTCTCAAAGGTGATAACGGTAAACTGGCTTTTTTCGAGAGTCTCGGTTTCACACTCTCTTCCTCTATGAATCTTGCTACCTATATATCCTCCTCCGCTGCTCCTGCTGACACGCTTCCATCTCTCGTAAACAAGGTTGCATCTATCAAACTGCTCCTTTTTCCTCATAATAATACCACTGCTACTACTCAATTCCTTATCAATAATATTCGCCTCTTCATGCGCAACTTATCTATTTCAATGCTCGATGAAGATCTGCAACACACTTTCTCCTTTTTCCAAAAGCTTCAAGCTAAGCGTGGAGGTCTTAATATTCTCGCTTCTCAAGATCACGCTTTCCGTTGCTTCATTGAAACTTTTCCTCGTCTACTTTTGTTATCACTAAATTCTCACATCTCACCTATACTCAATTTTCTACAACATTTTGGAATCCCCGCACATACCCTAGTGCTCGCTTTTCCTCCTATTCTGCTTTGGAATCTTCAACTCCTTCACACTAGAGTCAAAGCTTTGAACCAGATTCATGGCGTCGGTCAAGATTATGCCAACTTGATGCTAAAATATCCCTGGGTTCTATCTACAACCATTCAAAACAACTATAAACAACTCCTTGCCTTTTTATATTCCGCTCAGGTTCCAAAGACGTGGATAGACCGTGCAGTCAAAAGACGACCCCAACTCTTGGGTTGTTCAACTAGCAAGATGAAGCTGATGGTGGATGAGTTTGCCGAACTAGGCGTTCAAAGGAAAAAGTTGGATCAGGTTATCACTAAAAGTCCTCAGCTATTATTACAGAATCCCGAAGACTTTCTGCAGGTTGTTCTGTTCTTTGAAAATATGGGTTTTGATAAAGACGACATTGGGAGAATACTTGCTCGCTGCCCTGAAATTTTTGCCACCAGCATTACTAACACCTTCCAGAGAAAGATTGATTTCCTTAGTAGTATTTGTCTTTCTAAAGCTTACCTTCCTCTGGTTATCAAAAAATATCCAGAAGTACTTGTGTCTGATGTTGACATAACCTTGCCTCAACGGATAGTGTACTTGATGAAGCTAGGACTTTCAAAGAAGGAAGTTGCATTTATGGTACGTAAATTTTCTCCTCTACTTGGGTACAGCATAAATGAGGTTCTGCAGCCAAAAGTAGAATTTCTGGTGAACACAATGAAGAGGCCATTAAGAGATGTGGTGGACTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAGCCAAGATATTGGGTTCTCAAAGGAAGGAATATAGAATGTAGCTTAAAGGACATGTTGGCAAAAAATGATGAAGAATTTGCTGCTGAATTTATGGGTGTTGGAACTCTGTCTTCTCATGATAGACTGTAA 1812 0.4117 MLVGIERNSFVPVAHRIERRFPVKSKFPNLRKPGKFHIHYFYDDKRTTPNNWQQRCRSGLGESPLSDWELREGRMAVSSFLQQMGLSLEESDSIASNSPSYLNMLVEGVRDLELLDHGGNRDLELLDHANNNALFDFNLNYTDKILHIAALKGDNGKLAFFESLGFTLSSSMNLATYISSSAAPADTLPSLVNKVASIKLLLFPHNNTTATTQFLINNIRLFMRNLSISMLDEDLQHTFSFFQKLQAKRGGLNILASQDHAFRCFIETFPRLLLLSLNSHISPILNFLQHFGIPAHTLVLAFPPILLWNLQLLHTRVKALNQIHGVGQDYANLMLKYPWVLSTTIQNNYKQLLAFLYSAQVPKTWIDRAVKRRPQLLGCSTSKMKLMVDEFAELGVQRKKLDQVITKSPQLLLQNPEDFLQVVLFFENMGFDKDDIGRILARCPEIFATSITNTFQRKIDFLSSICLSKAYLPLVIKKYPEVLVSDVDITLPQRIVYLMKLGLSKKEVAFMVRKFSPLLGYSINEVLQPKVEFLVNTMKRPLRDVVDYPRYFSYSLEKKIKPRYWVLKGRNIECSLKDMLAKNDEEFAAEFMGVGTLSSHDRL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00039 603 FunFam Mitochondrial transcription termination factor family protein 382 595 - -
Vifa5g00039 603 SMART mt_12 437 468 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 SMART mt_12 473 504 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 SMART mt_12 402 432 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 SMART mt_12 542 573 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 SMART mt_12 509 541 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 Gene3D Transcription termination factor 3, mitochondrial 381 596 IPR038538 -
Vifa5g00039 603 PANTHER CGI-12 PROTEIN-RELATED 496 592 IPR003690 GO:0003690|GO:0006355
Vifa5g00039 603 Pfam mTERF 285 588 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00039 Vifa-Chr5 5815495 5821160 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa5g00039 mTERF 3.3e-86 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00039 K15032 - gmx:100802127 651.744