Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00032 ATGAATTTGAGAAAAAGTTGCTGGGTGATGGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTATAAAGGACAATTAACTAAGCCATGTAAGGGATTATTGCTTTTCAGGCCCTCTGGTACAGGAAGAACAATGCTCGCAAAGGCTGTAGCAACTGAAGCTGGAGCGAATTTTATAAACATTTCAATGTCCAACATTACTTCCAAGGTTGGTAGTATGTTAGGGAGACATGAAATCCCCGGTGGGTCTTTTGATCTTGATGGAGAATATACTGTAGACTGA 330 0.4 MNLRKSCWVMDDIGALENVKDTLKELVMLPLKRPELFYKGQLTKPCKGLLLFRPSGTGRTMLAKAVATEAGANFINISMSNITSKVGSMLGRHEIPGGSFDLDGEYTVD 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00032 109 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 10 85 - -
Vifa5g00032 109 Pfam ATPase family associated with various cellular activities (AAA) 49 86 IPR003959 GO:0005524|GO:0016887
Vifa5g00032 109 Gene3D - 10 85 IPR027417 -
Vifa5g00032 109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 85 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00032 Vifa-Chr5 4685908 4687512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00032 11 85 Calmodulin-binding Proteins AT3G56690 38.667 2.96e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00032 - - ath:AT1G02890 145.976