Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00021 ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCTTGGGTCTCTGAGATTCGCCATCCATTATTGAAAAGGAGGGTGTGGTTAGGAACATTTGAAACAGCTGAAGAAGCAGCTAAAGCATATGATGAAGCAGCAGTTTTGATGAGTGGAAGAACTGCAAAAACCAACTTTCCAATTAATATGGAAAATAAAATTTCATCTTCAAGTTCAAGTTCAAGTTCTCCAAAAGCATTTTCTGCAGTTCTGAGTGCAAAGCTAAGGAAGTGTTGCAAGTTTCCTTCACCTTCACTCACATGCTTGAGACTTGATGCAGAGAATTCGAACTTCGGTGTGTGGCAGAAAGGTGCAGGTCCTCGTTCTGAATCAAATTGGATTATGATGGTTGAATTAGAAAGGAAAAAAAGTGATTCTGTGGGAGAGAAAGTAAAGCCAGAAGAGGTGTTAAGTAATAATGGTTTGGATGATGAACAGAAAGTTGCTTTGCAGATGATAGAAGAACTTCTCAATAGAAACTAA 531 0.3955 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAVLMSGRTAKTNFPINMENKISSSSSSSSSPKAFSAVLSAKLRKCCKFPSPSLTCLRLDAENSNFGVWQKGAGPRSESNWIMMVELERKKSDSVGEKVKPEEVLSNNGLDDEQKVALQMIEELLNRN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00021 176 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Vifa5g00021 176 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vifa5g00021 176 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Vifa5g00021 176 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vifa5g00021 176 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vifa5g00021 176 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Vifa5g00021 176 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Vifa5g00021 176 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vifa5g00021 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 128 - -
Vifa5g00021 176 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00021 Vifa-Chr5 3474548 3475173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00021 1 176 AP2-EREBP Transcription Factor Family AT1G15360 59.296 9.48e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g00021 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00021 - - gmx:100785898 249.98