Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00020 ATGGGGTTCAAAGGTTCAACGTTCAGCATGGAGTCGAGGGTAAAGCCCACCCAAAGTTTCTTTTTCTTCTTCTCGCCTACACTACTGTATGATTTGCTTATGGCCAATGATGAACATGTTGAGGCCTTCGTGTTTGGACATTGGTTTATGATTTTTGGTGATACAGGTTATGGAATAATTGATTTTGTGATGGTTGTACTGGTTTGGAAAATGGTAGGTTTTGAACTAGTTATGGTATTTGGTAATGGTTATGTTGATGGTTTGATGTTGGTTCTACTGGTTTATGCAGTAGGCTATATGGCATCCATTTGGAAAGGATTTGTCATGAATCCGATTTTAGTAAGGAACAAATGTCTCATCAAAATCAATATATTCTTCTTGCTTATAGCCTTGGGCTACACAGGTAAGTTGACGGCGGAAATTCTGCTACACGGAACTCTCCATGCAACAATCTATGAAATCGATAAAATCGAGAACAGTGGTGGTGGTAACATTTTCGGCAAGTTTAAACGAAAAGCCGAGAAGACGGTCGGATTTGGAAAAGGAGATCTGAAACTTTATGCAACCATTGATTTGGAGAAAGCACGCGTGGGAAGGACTAGAATATTGGGAAAGGAGTATGCTATCCCTAAATGGTATGAGTCTTTTCATATTTACTGTGCTCATTTGGTAACAAATATCATATTCACTGTGAAAGATGACAATCCTATTGGAGCATCCTTAATTGGAAGAGCATATGTGCCTGTTGAGGAAGTGTTGAGTGGAAAGGAAATAGATAAATGGGTTGAAATATTGGATGAGCATAAAAAGCCAATTCATGGAAATTCAAAGATCCATGTGAAGTTGCAGTTTATTGATGTTTCAAAAGACCTAAACTGGGCTCTAGGTGTAAGTCCTAAGTTTGCTGGAATTCCTTTTACTTTCTTTACTCAAAGAGAAGGATGTAAGGTTTCACTATATCAGGATTCTCATGTCCTGGACAATTTTGTCCCGAATATACAACTTGCTGGAGGCAAGACTTACAAGCCTCAGAGATGTTGGGAGGATATTTTTGATGCTATCACAAAAGCGAGACACTTAATATACATTACAGGCTGGTCTGTTTATACTGAGTTTTCCTTGGTAAGGGATTCAAGAAGGCAAAGGCCGGGAGGTGACATAACACTTGGTGAGCTTCTTAAGAAAAAAGCACAAGAAGGTGTTAGGGTGTGTATGCTTATTTGGGATGATAGAACATCGGTTAAGTTTCTAAAGAGAGATGGTTTGATGGCTACTCATGATCAAGATACTGCGAAATACTTCCAAGGCTCTGCAGTGCAGTGTGTTTTATGCCCTCGGAATCCTGATGATGGTGGAAGCATTGTCCAAGATATATCAATTGCTAGCATGTTTACTCATCATCAGAAAATTGTGGTGGTGGACAGTGAGTTGCCAGGTCAAGATAAGCGCACAATTGTGAGTTTTGTTGGAGGCATTGATCTCTGTGATGGAAGATATGATACTCAGTTTCATTCACTTTTCAGAACCTTGGATACAGTACATCGTAATGATTTTCATCAGCCTAACTTTCCTGGTGCTACAATACAAAAAGGTGGTCCTAGGGAACCTTGGCATGATATCCACTCAAGGCTTGAAGGTCCCATTGCTTGGGATGTTAAGTTTAACTTTGAGCAAAGATGGAGGAAGCAAGGTGGAAAGGCCATGCTTGTTCCTCTGAGAGAGCTTCAACGCGTCCTTATTGACCAATCCCAGGTAACTTTCCCTGATGATCAAGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGAGCAGCTTTCGGGTTCCCAGTAACTCCTGAAGATGCTGCTAAAGCCGGGCTTATTAGTGGGAAGGATAACATAATAGATCGCAGTATTCAAGATGCTTATATCAATGCTATTCGACGTGCCAAAAATTTCATCTACATTGAAAATCAATATTTCATTGGAAGCTGTTATGGGTGGAGTCCTGATGGGATTAAGCCTGAAGACATTGGTGCTTTGCATCTGATTCCAAAAGAGCTTTCACTTAAGATTGTTAGCAAGATTAAAGCTGGGGAAAAGTTCACTGTGTATATTGTGATTCCCATGTGGCCTGAAGGTATCCCAGAAAGTGCATCAGTTCAGGCAATATTAGACTGGCAGAGGAGAACACTGGATATGATGTACAGAGATATTATTCAAGCACTCAATGCCAAGGGAATTAAAGATGATCCTCGGAACTATTTGACATTCTTATGTCTTGGAAATCGGGAGGTGAAAAAACAAGGAGAGTATGAGCCTACTGAAAGACCAGAACCTGATACGGATTATATCCGAGCCCAAGAGGCCAGGCGTTTCATGATTTATGTTCATTCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGATCTGCTAACATCAACCAAAGGTCAATGGATGGAGCTAGGGACTCTGAAATAGCAATGGGAGGTTATCAGCCCTATCATTTAGCTAATAGGCAGCCTGCAAGGGGTGAGATTCATGGTTTCCGCATGTCGTTGTGGTACGAGCACCTTGGCATGCTTGAAGAATTATTCCTTCACCCAGAAAGTAAAGAATGCATTAGTAAGATAAACCAGATGGCGGACAAGAATTGGGATATCTATTCTAGCAACTCCCTACAGCAAGACCTCCCGGGACACCTTCTCCGCTATCCCATTGGGATTTCAAACGAAGGAAAGGTGACAGAGCTGCCAGGATTTGAATTCTTCCCCGACACCAAGGCTCGTGTTCTTGGCAGAAAGGTTGACTACCTGCCACCTATACTTACTACTTAG 2829 0.4107 MGFKGSTFSMESRVKPTQSFFFFFSPTLLYDLLMANDEHVEAFVFGHWFMIFGDTGYGIIDFVMVVLVWKMVGFELVMVFGNGYVDGLMLVLLVYAVGYMASIWKGFVMNPILVRNKCLIKINIFFLLIALGYTGKLTAEILLHGTLHATIYEIDKIENSGGGNIFGKFKRKAEKTVGFGKGDLKLYATIDLEKARVGRTRILGKEYAIPKWYESFHIYCAHLVTNIIFTVKDDNPIGASLIGRAYVPVEEVLSGKEIDKWVEILDEHKKPIHGNSKIHVKLQFIDVSKDLNWALGVSPKFAGIPFTFFTQREGCKVSLYQDSHVLDNFVPNIQLAGGKTYKPQRCWEDIFDAITKARHLIYITGWSVYTEFSLVRDSRRQRPGGDITLGELLKKKAQEGVRVCMLIWDDRTSVKFLKRDGLMATHDQDTAKYFQGSAVQCVLCPRNPDDGGSIVQDISIASMFTHHQKIVVVDSELPGQDKRTIVSFVGGIDLCDGRYDTQFHSLFRTLDTVHRNDFHQPNFPGATIQKGGPREPWHDIHSRLEGPIAWDVKFNFEQRWRKQGGKAMLVPLRELQRVLIDQSQVTFPDDQETWNVQLFRSIDGGAAFGFPVTPEDAAKAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFIGSCYGWSPDGIKPEDIGALHLIPKELSLKIVSKIKAGEKFTVYIVIPMWPEGIPESASVQAILDWQRRTLDMMYRDIIQALNAKGIKDDPRNYLTFLCLGNREVKKQGEYEPTERPEPDTDYIRAQEARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLANRQPARGEIHGFRMSLWYEHLGMLEELFLHPESKECISKINQMADKNWDIYSSNSLQQDLPGHLLRYPIGISNEGKVTELPGFEFFPDTKARVLGRKVDYLPPILTT 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00020 942 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 462 498 IPR001736 GO:0003824
Vifa5g00020 942 ProSiteProfiles C2 domain profile. 133 262 IPR000008 -
Vifa5g00020 942 Pfam Phospholipase D C terminal 860 932 IPR024632 -
Vifa5g00020 942 PANTHER PHOSPHOLIPASE D 141 930 IPR015679 -
Vifa5g00020 942 FunFam Phospholipase D delta 337 578 - -
Vifa5g00020 942 CDD C2_plant_PLD 139 285 - -
Vifa5g00020 942 SUPERFAMILY Phospholipase D/nuclease 299 568 - -
Vifa5g00020 942 SMART C2_3c 146 261 IPR000008 -
Vifa5g00020 942 CDD PLDc_pPLDalpha_2 626 835 - -
Vifa5g00020 942 Gene3D C2 domain 144 294 IPR035892 -
Vifa5g00020 942 SUPERFAMILY Phospholipase D/nuclease 585 872 - -
Vifa5g00020 942 Pfam Phospholipase D Active site motif 789 815 IPR001736 GO:0003824
Vifa5g00020 942 Pfam Phospholipase D Active site motif 463 498 IPR001736 GO:0003824
Vifa5g00020 942 FunFam Phospholipase D 601 834 - -
Vifa5g00020 942 Gene3D Endonuclease Chain A 610 830 - -
Vifa5g00020 942 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 788 815 IPR001736 GO:0003824
Vifa5g00020 942 PIRSF PLD_plant 134 942 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa5g00020 942 Pfam C2 domain 146 264 IPR000008 -
Vifa5g00020 942 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 143 287 IPR035892 -
Vifa5g00020 942 Gene3D Endonuclease Chain A 333 585 - -
Vifa5g00020 942 SMART pld_4 462 498 IPR001736 GO:0003824
Vifa5g00020 942 SMART pld_4 788 815 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00020 Vifa-Chr5 3459661 3469954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00020 139 942 Phospholipase D Gene Family (Wang group) AT3G15730 74.599 0.0 1302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00020 K01115 - gmx:100784434 1380.16