Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00015 ATGATGGGCTTATTAAAAAATGGAACTTTGTTTTTGTATATTGTGATGCTACTTCTGTTAACAACCTGTCAAGCCAAAGATCAACACATTCACCAGATACAGCCTGGATTCAGTGCATCTCGGTTAGATTGGGACGATCATAACGGGTTCTTTTTACTATCGAACAACTCGGCTTTTGCTTTTGGATTCTTCACAACCCTTGATGTTTCTTTGTTTGTTTTAGTAGTCATTCATTTGAGTAGCTTCAAAGTTGTTTGGACAGCAAATAGAGGCTTTCTTGTTAGAAATTCTGATAAATTTGTGTTTGAACATAGTGGAAATGTTTATTTGGAAAGTGGAAACGGTTTTGCTTGGGCAACAAACACAACAGGACAGAAAGTCAAGGACATGGAGTTGTTGGATTCAGGAAATTTGGTTTTGTTTGGTGAAAATAGGAAAGTTGTTTGGCAAAGTTTTAGTCATCCCACTGATACACTTTTGCCTGGTCAATCCTTTGTTGAAGGAATGAGTCTTAAAAGTTTTCCGAATCGAATGAACTTGTTTCATTTTCTTAGTTATGTAGAAGGTGATTTGGTTCTGTATGCAGGATTTGAAACTTCACAACTGTATTGGTCCTTAATGGGAGAAGTTAGTAAAAGTCCAAGTTCGGGAAATGTGACAAGTAGTAAAAAGGTTCACTATGCTTCTTTGGTTTCTAATTCATGGAACTTTTATGATAAAAATGGAGTTTTGGTTTGGAAAATTGTGTTTTCTGATCATTCAGATCCCAAGTCATTCTATGCTGCGATTTTGGATCCAAATGGTGCGATTTCTTTCTATGATCTTAACAAAGGAAAGTCTATTAACCCTGAGATATTGAAATTGCCACAAGACGCTTGTGGAATTCCTGAGCCTTGTGATCCTTACTATGTTTGTTTCTTTGAGAATTGGTGTGAATGTCCTAAGCTTCTTCGATCGCGTTTCAATTGCAAACCTCCTAACATCTCAGCATGTTCTCCTCATGGAAGTTTGACAGAACTTTTATATGTTGGTGAAGATCTTGATTATTTTGCACTTAAATATGATGCACCTGTTTTGAAAAAATCGACTTTGAATTCGTGCAAAGAGGCTTGTGTAAGAAACTGTTCCTGCCTTGTGCTTTTCTATGAAAACAGTACTGGTAGTTGCTTTCATTTCGAGCAAACCGGGAGCTTCCAACGGTTTAAAGGAAGCAGCGGCGGTTATGTTTCGTATATGAAGGTTTCAACTGATAGTGGTGGAAATGACGGCGAGGATCATGGAAGAAAGACCATGCTGCTGGTTTTTGTTATAGGGATTCTCACAGTTTTGGCCATTTTGGGTCTTATAGCTGGATTCTGGTGTTACTATTTCAAGAAGAAGAATTTTGATGAGTATCCTCAAGAAGATACTTTCGAGGAAGATGAATTCTTTGATAGTCTCTCTAATATGCCGGCGCGTTTTACCTATAGAACACTTGCTAGAGCAACTAAGGATTTCTCCACGAAAATCGGTGAAGGAGGGTTCGGCTCGGTGTATCTAGGTGTACTTGAAGATGGTAAAACACAATTGGCAGTGAAAAAGTTGGAAGGTGTAGGACAAGGAGCAAAAGAGTTCAAAGCAGAAGTATCGATAATCGGAAGTATTCACCATGTTCATCTTGTGAAGCTTAAAGGGTTTTGTGCCGAAGGTCCTCATCGAATGCTTGTTTATGAATACATGGCAAGAGGTTCATTAGATAAATGGATCTTCAAAAACAGCGAAAACACAATGTTGTTAACTTGGGAAGCAAGGTACAATATTGCAATAGGCACTGCAAAAGGATTGGCCTATCTTCATGAAGAGTGTGAAGTTAGGATCATTCACTGTGATATAAAACCACAAAATGTTCTTCTTGATGATAACTTCATGGCTAAGGTTTCGGATTTCGGGTTGGCGAAACTAATGAGCAGAGAACAAAGCCATGTTTTCACAACTCTAAGAGGAACAAGAGGGTATTTAGCACCGGAATGGATAACTAACTATGCGATTTCCGAGAAGAGTGATGTGTTTAGCTACGGAATGCTTTTGCTTGAGATTGTTGGTGGAAGGAAAAACTATGATCAATGGGAAGGAGAAGAGAAAGCACATTTTCCTTCTTATGTATCAAGAATGATGGAGGAAGGGAAAATAAGAGAAGTTATCGACAAAAAGATAGATATCGATGAGGAAGATGAAAGTGTTGTGACGGCTCTTAAAGTTGCCCTTTGGTGTATACAAGATGATATGAATTTGAGACCTCCAATGAGTAAAGTTGCTCAAATGCTTGAAGGTTTGTGTATTGTGAATGATCCACCATCTTTGTTACACTCAAGTAGTTATTCAAGTTTCTTGAAAATGAGTAGTGGAGAAGGTAGTTCATCAGGACAAGCTAGTTTTTATAGTAATGTTCCTTTGTCTTGTGTTCAGTTATCAGGACCAAGATGA 2463 0.3808 MMGLLKNGTLFLYIVMLLLLTTCQAKDQHIHQIQPGFSASRLDWDDHNGFFLLSNNSAFAFGFFTTLDVSLFVLVVIHLSSFKVVWTANRGFLVRNSDKFVFEHSGNVYLESGNGFAWATNTTGQKVKDMELLDSGNLVLFGENRKVVWQSFSHPTDTLLPGQSFVEGMSLKSFPNRMNLFHFLSYVEGDLVLYAGFETSQLYWSLMGEVSKSPSSGNVTSSKKVHYASLVSNSWNFYDKNGVLVWKIVFSDHSDPKSFYAAILDPNGAISFYDLNKGKSINPEILKLPQDACGIPEPCDPYYVCFFENWCECPKLLRSRFNCKPPNISACSPHGSLTELLYVGEDLDYFALKYDAPVLKKSTLNSCKEACVRNCSCLVLFYENSTGSCFHFEQTGSFQRFKGSSGGYVSYMKVSTDSGGNDGEDHGRKTMLLVFVIGILTVLAILGLIAGFWCYYFKKKNFDEYPQEDTFEEDEFFDSLSNMPARFTYRTLARATKDFSTKIGEGGFGSVYLGVLEDGKTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRMLVYEYMARGSLDKWIFKNSENTMLLTWEARYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFMAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIVGGRKNYDQWEGEEKAHFPSYVSRMMEEGKIREVIDKKIDIDEEDESVVTALKVALWCIQDDMNLRPPMSKVAQMLEGLCIVNDPPSLLHSSSYSSFLKMSSGEGSSSGQASFYSNVPLSCVQLSGPR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00015 820 ProSitePatterns Protein kinases ATP-binding region signature. 503 527 IPR017441 GO:0005524
Vifa5g00015 820 SMART serkin_6 497 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00015 820 Pfam Protein kinase domain 500 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00015 820 ProSiteProfiles Bulb-type lectin domain profile. 37 153 IPR001480 -
Vifa5g00015 820 CDD B_lectin 48 155 IPR001480 -
Vifa5g00015 820 FunFam S-receptor-like kinase 5 573 777 - -
Vifa5g00015 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Vifa5g00015 820 SUPERFAMILY Protein kinase-like (PK-like) 479 769 IPR011009 -
Vifa5g00015 820 CDD PAN_AP_plant 358 415 - -
Vifa5g00015 820 ProSiteProfiles Protein kinase domain profile. 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00015 820 Gene3D Phosphorylase Kinase; domain 1 463 572 - -
Vifa5g00015 820 PIRSF SRK 5 816 IPR024171 GO:0004674
Vifa5g00015 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 205 IPR036426 -
Vifa5g00015 820 SMART blect_4 43 155 IPR001480 -
Vifa5g00015 820 Gene3D Transferase(Phosphotransferase) domain 1 573 774 - -
Vifa5g00015 820 CDD STKc_IRAK 503 771 - -
Vifa5g00015 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 44 779 - -
Vifa5g00015 820 ProSiteProfiles PAN/Apple domain profile. 331 415 IPR003609 -
Vifa5g00015 820 FunFam serine/threonine-protein kinase PBS1-like 466 572 - -
Vifa5g00015 820 Pfam D-mannose binding lectin 84 165 IPR001480 -
Vifa5g00015 820 Gene3D - 47 154 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00015 Vifa-Chr5 2128261 2130723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00015 473 778 Receptor kinase-like Gene Family AT5G20050 46.130 6.51e-88 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa5g00015 Pkinase 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00015 - - psat:127087581 1532.69