Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00010 ATGGCGGTTATTTCCCTCTCTCTTCTTCCTCCTCATTCCTGCTTCTGTGCTGCCGGAATCCATTTACGTTCCCACAACAGCACCAGCAATTTCCTTTCGATTCATTCTCCTTCTTCTTTTCCTTCTACTTTCTCTAACTCTAATTCTAAATTCTCATCTAGAAGAAAACGATTTCACACTGTTTTTGCTTCTTCTTCTGATTATTATGCTACTCTCGGAGTTCCCAAATCCGCCACCGTCAAAGATATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGTATCATCCTGATGTGAACAAAGAGCCTGGGGCAACTGATAAATTTAAAGAGATTAGTAATGCCTATGAGGTGCTATCAGATGACAAAAAGAGGGCTTTGTATGATCGATATGGTGAGGCAGGGGTTAAGAGCTCAGTGGGAGGAGGATCAAGTGCCTATGCGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGTCAAATATGGGCGGCTTTGCTGGCATGGATCCAACTGGATTTGGCACACGGCGTCGTAGTACTGTTACAAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTCGGAGCAGAGAAAGAATTCGAGCTTTCCCATTTAGAAACATGCGAAACCTGTACTGGTACTGGTGCAAAGTTAGGATCCAAGATGAGAGTATGTTCAACTTGTGGTGGCAGAGGTCAGGTGATGAGGACCGAACAAACACCTTTTGGGTTGTTCTCACAGGTTTCAGTATGTCCAAACTGTGGAGGTGATGGTGAAACCATATCTGAAAATTGCCGTAAATGCAGTGGTGCAGGACGCATACGGGTTAAGAAAAATATAAAAGTTAAAGTTCCTCCCGGGGTTAGCTCAGGCAGTATCTTAAGAGTCACTGGAGAGGGTGATGCTGGACCAAGAGGCAGGGGGCCTCCAGGAGATCTTTATGTATATCTTGATGTGCTTGAGATACCAGGAATTCAAAGAGATGACATTAATCTTCGCTCAACAATATCAATCACTTATCTAGATGCTATACTGGGGTCTGTAGTGAAGGTAAAGACGGTTGAAGGCACTTCTGAACTACAAATCCCTTCTGGTACCCAACCTGGAGATGTCATCGTCCTTGCAAAGAAGGGTGTACCAAAATTAAACAGACCATCAATACGTGGTGACCACTTATTTACTGTTAAAGTTACAATACCAAAACGTATCAGTTCAAAGGAGCGGGAGGTGCTTGAAGAACTTGCTTCTCTAGGTGACACAAGTAGTCATTCAAGATCCCGTCCTAGGACTCAACCTTCCACCGGAAGTAAGGCAGCTCCTGCAGCTCAAAGGGCCGAAAGTCCAACAGCAACAGTCACAGAAAAACCAGAGAAATCAGAAGAGCGAGAAGAACAAGATGATGACTTATGGAACAAACTAAAGAACGTGGCTGGATCTGTGGCAAATGGAGCTCTAAAGTGGTTTAAAGATAATCTCTAG 1497 0.4369 MAVISLSLLPPHSCFCAAGIHLRSHNSTSNFLSIHSPSSFPSTFSNSNSKFSSRRKRFHTVFASSSDYYATLGVPKSATVKDIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDRYGEAGVKSSVGGGSSAYATNPFDLFETFFGSNMGGFAGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGAEKEFELSHLETCETCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGETISENCRKCSGAGRIRVKKNIKVKVPPGVSSGSILRVTGEGDAGPRGRGPPGDLYVYLDVLEIPGIQRDDINLRSTISITYLDAILGSVVKVKTVEGTSELQIPSGTQPGDVIVLAKKGVPKLNRPSIRGDHLFTVKVTIPKRISSKEREVLEELASLGDTSSHSRSRPRTQPSTGSKAAPAAQRAESPTATVTEKPEKSEEREEQDDDLWNKLKNVAGSVANGALKWFKDNL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00010 498 Gene3D - 331 423 - -
Vifa5g00010 498 MobiDBLite consensus disorder prediction 420 476 - -
Vifa5g00010 498 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vifa5g00010 498 PRINTS DnaJ domain signature 123 142 IPR001623 -
Vifa5g00010 498 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vifa5g00010 498 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vifa5g00010 498 FunFam Molecular chaperone Hsp40/DnaJ family protein 331 423 - -
Vifa5g00010 498 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Vifa5g00010 498 Gene3D - 214 278 - -
Vifa5g00010 498 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 201 281 IPR036410 -
Vifa5g00010 498 CDD DnaJ 67 120 IPR001623 -
Vifa5g00010 498 FunFam Chaperone protein dnaJ A6 chloroplastic 64 170 - -
Vifa5g00010 498 MobiDBLite consensus disorder prediction 457 476 - -
Vifa5g00010 498 FunFam Putative Mitochondrial DnaJ chaperone 273 321 - -
Vifa5g00010 498 FunFam Chaperone protein dnaJ A6 chloroplastic 214 278 - -
Vifa5g00010 498 Pfam DnaJ domain 67 128 IPR001623 -
Vifa5g00010 498 ProSiteProfiles Zinc finger CR-type profile. 201 283 IPR001305 GO:0031072|GO:0051082
Vifa5g00010 498 SMART dnaj_3 66 123 IPR001623 -
Vifa5g00010 498 SUPERFAMILY Chaperone J-domain 63 173 IPR036869 -
Vifa5g00010 498 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vifa5g00010 498 SUPERFAMILY HSP40/DnaJ peptide-binding domain 332 417 IPR008971 GO:0006457|GO:0051082
Vifa5g00010 498 Gene3D - 184 321 - -
Vifa5g00010 498 Gene3D DnaJ domain 63 169 IPR036869 -
Vifa5g00010 498 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 326 IPR008971 GO:0006457|GO:0051082
Vifa5g00010 498 Pfam DnaJ C terminal domain 187 406 IPR002939 -
Vifa5g00010 498 MobiDBLite consensus disorder prediction 423 456 - -
Vifa5g00010 498 Pfam DnaJ central domain 214 278 IPR001305 GO:0031072|GO:0051082
Vifa5g00010 498 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 41 432 - -
Vifa5g00010 498 Hamap Chaperone protein DnaJ [dnaJ]. 64 482 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vifa5g00010 498 NCBIfam molecular chaperone DnaJ 67 422 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vifa5g00010 498 CDD DnaJ_C 185 409 - -
Vifa5g00010 498 CDD DnaJ_zf 214 278 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00010 Vifa-Chr5 1620306 1627839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00010 68 130 C2H2 Transcription Factor Family AT1G74250 46.377 5.43e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00010 K03686 - gmx:100798567 756.518