Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00004 ATGGCTTTTTTCAAGGTTTTTTGTTGTGGAATTGCTTCGGATCGCAGCGGACGTGGGAAGAAACAACCTCCGTGGCGGGTGTTTTCTTTGAAGGAATTGCACTCGGCTACGAATAATTTCAACTATGATAACAAGCTTGGCGAAGGAGGGTTTGGAAGTGTGTATTGGGGCCAGCTTTGGGATGGATCACAAATTGCGGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCCGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGCCAGGAACGGCTAATTGTATACGACTATATGCCGAATTTGAGCTTACTCTCTCATCTTCACGGACAGCACTCAACAGAAAGTCTCCTTGATTGGAATCGGCGGATGAATATTGCAATCGGGTCTGCCGAGGGAATTTTATATCTTCACGTCCAAGCAACACCGCATATCATCCATAGAGACGTTAAAGCGAGCAACGTATTGCTGGATTCAGATTTCCAAGCTCGTGTTGCTGATTTTGGTTTTGCCAAGTTGATCCCCGACGGAGCAACGCACGTGACTACGAGAGTTAAAGGCACCCTTGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAACGAGAGCTGTGACGTCTACAGTTTTGGTATTCTCCTTCTAGAACTCGCTACCGGCAAAAAACCACTTGAAAAACTGAGTTCGTCAATGAAACGATCGATAAACGATTGGGCACTGCCGTTAGCTTGTGAGAAAAAATTTAGTGAACTGGCGGATCCAAGACTTAACGGTGACTATTCAGAAAACGAGCTTAAAAGGGTTGTATTAGTTGCTTTAGTATGTGCTCAGAATCAACCGGAAAAGAGACCAACGATGCTCGAGGTGGTGGAACTTCTGAAAGGTGAGTCGAAAGAGAAGGTTTCGCAGTTGGAGAATAATGAACTGTTTAAGAACCCTCTTGCTGTTGGAAATAATGATGAGATATTCGTATCAGCTGCTGAAGGGAGTTCAGACTTCATCTCAGAAGAGAATGATTCTAAACATGAGATGGAGGAGAATAAAGAACCATGA 1107 0.4381 MAFFKVFCCGIASDRSGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSTESLLDWNRRMNIAIGSAEGILYLHVQATPHIIHRDVKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELATGKKPLEKLSSSMKRSINDWALPLACEKKFSELADPRLNGDYSENELKRVVLVALVCAQNQPEKRPTMLEVVELLKGESKEKVSQLENNELFKNPLAVGNNDEIFVSAAEGSSDFISEENDSKHEMEENKEP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00004 368 MobiDBLite consensus disorder prediction 346 368 - -
Vifa5g00004 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vifa5g00004 368 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Vifa5g00004 368 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00004 368 MobiDBLite consensus disorder prediction 352 368 - -
Vifa5g00004 368 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Vifa5g00004 368 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00004 368 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Vifa5g00004 368 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Vifa5g00004 368 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Vifa5g00004 368 PANTHER OS01G0253100 PROTEIN 21 318 - -
Vifa5g00004 368 CDD STKc_IRAK 46 313 - -
Vifa5g00004 368 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Vifa5g00004 368 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00004 368 Coils Coil 305 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00004 Vifa-Chr5 1026622 1028436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00004 28 314 Trihelix Transcription Factor Family AT1G70460 51.203 1.33e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vifa5g00004 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00004 - - gmx:100788153 661.759