Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05067 ATGAATTCAAGAGAGTTGAACATGATGAAATTTCCAATGAGTTTGATTAGCACTTGGTCTGATGATCATGATGATAATGATCATGGTGATGATCATCGCAGCAGCCGTGTTATTGTCGATGAAGTCGACTTTTTCTCGGATAGGAAGGAGAAATCGTCGTCGCCCGATGATCATGTTTCCATCAAGAATAATCAGATTTATGATCCTCATTGCACTCTCCATGATGCTGACCATGTCAACACCGGTCTACAACTTCTTATTACTAATATTGGAAGTGATTTGGATGATGAATCTACAATGAATGCTGGAGATAAACATGTCAAGAATCTTCAGTTGCAATTGCAAGAAGAGCTTAGACTAAAGAACGTAGAGAATCAACGGTTGAAGGAAAAGCTAAGCGATTTGCAAATGCGATATGTGTCCTTAATGCAACAGAATCAACGAAACGAAGCTTCGGAAAATGAGACTGTGAATGGAAAAGCTGAGGGGGGAGATGGTGTGATGGCTAGAAAGTTTGTGAATGGTTCATCATCAGAAGTAGTAGATGATCCAAAAGTATTAAATTCTCCTAATTTGGATGAAAGAAAGCCATCAAGATCGCCCCGGAACAACAATAAAACTGATCAGAAAGAGGTCGATCCAGATTCAACTGATCAACTGGTACAAGTTTGGGAGCCAAATAAGCTTCCAAGATTAAACCCCTCCAATGCTACTGATCAAGCTGCTGCGGAAGCTACTATGAGAAAAGCACGTGTCTCCGTCCGTGCGCGATCAGAAGCCCACATGATCAATGATGGGTGTCAATGGCGAAAGTATGGACAGAAAATGGCGAAGGGAAACCCTTGTCCTCGAGCATATTACCGATGCACAATGGCGGTCGGTTGCCCCGTTCGCAAGCAAGTTCAGCGTTGTGCTGATGACAGAACAATTCTGATAACAACATATGAAGGGACACATAGCCATCCACTGCCACCTGCTGCTATGCCGATGGCGTCGACCACCGCAGCCGCTGCCACGGTCTTACTATCTGGATCAATGTCAAGTGCTGATGGGGTGGTGAACCCAAATTTACTATCTAGAATTCTTCCAAATTGCTCATCTAGCATGGCCACACTCTCAGCAACAGCACCATTTCCTACTGTCACACTAGACCTCACACATGACAACACAGATAACAATAACAACCAAAATTCTCATTCCCAGTTTCACCTAGGACAGCCTCAAAACTTTGGATCAGGACAATTACCACAAGTCATTGCACAAGCACTTTACAACCAATCCAAATTCTCTGGCCTTCAACTGTCCCAAGATGTTGGAGGCTCTTCCCAATTGCACTCATCTCAACAAGCTTCATCACTCAGTGCTGCCATCACCGCCGATCCAAATTTCACCGCAGCAATCGCCGCCGCTATCTCCACCATAATTGGCGCTGGTTCTCCCAACAACAACAACAACAACAATCCTAATATCCTCAACAGTGCTGCTTACAATCAGTAG 1497 0.4409 MNSRELNMMKFPMSLISTWSDDHDDNDHGDDHRSSRVIVDEVDFFSDRKEKSSSPDDHVSIKNNQIYDPHCTLHDADHVNTGLQLLITNIGSDLDDESTMNAGDKHVKNLQLQLQEELRLKNVENQRLKEKLSDLQMRYVSLMQQNQRNEASENETVNGKAEGGDGVMARKFVNGSSSEVVDDPKVLNSPNLDERKPSRSPRNNNKTDQKEVDPDSTDQLVQVWEPNKLPRLNPSNATDQAAAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDRTILITTYEGTHSHPLPPAAMPMASTTAAAATVLLSGSMSSADGVVNPNLLSRILPNCSSSMATLSATAPFPTVTLDLTHDNTDNNNNQNSHSQFHLGQPQNFGSGQLPQVIAQALYNQSKFSGLQLSQDVGGSSQLHSSQQASSLSAAITADPNFTAAIAAAISTIIGAGSPNNNNNNNPNILNSAAYNQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05067 498 Gene3D WRKY domain 248 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g05067 498 MobiDBLite consensus disorder prediction 385 406 - -
Vifa4g05067 498 FunFam probable WRKY transcription factor 31 248 325 - -
Vifa4g05067 498 SUPERFAMILY WRKY DNA-binding domain 256 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g05067 498 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g05067 498 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g05067 498 MobiDBLite consensus disorder prediction 145 250 - -
Vifa4g05067 498 MobiDBLite consensus disorder prediction 188 215 - -
Vifa4g05067 498 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g05067 498 MobiDBLite consensus disorder prediction 478 498 - -
Vifa4g05067 498 Coils Coil 107 145 - -
Vifa4g05067 498 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 98 487 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05067 Vifa-Chr4 1586713440 1586715482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05067 9 489 WRKY Transcription Factor Family AT1G62300 47.471 3.01e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g05067 WRKY 7.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05067 - - mtr:11439068 556.984