Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05065 ATGGCCATTTCATCTTCACTTTTGTCACTTTCATTTTTCCTACTAACAATTGCTTTAACCTTTGTTAATGCATACTCAAAAGATTACTACTATAACACTAATAAGCCAAGGCTCAATAAGATAGATTCTTGTTGGCGCGCGAAACCGAATTGGTCATCAAACCGAAAAGCCTTAGCTGATTGTGCTATTGGTTTTGGCAAAGATGCTATTGGAGGCAAATTTGGTGCAATATATATAGTTACTGACTCATCTGATGATCCTGTGAATCCTAAACAAGGTACACTTCGTTATGGCGCGATACAAACGACGCCACTTTGGATCGTTTTCGATAGGGATATGGTTATTAGATTAAAGAATGAACTTATTATGAATAGTTATAAGACTATTGATGGTAGAGGAGTGAAAGTTGATATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAATCATGTGATTATACATGGAATCAGTATTCATGATTGTAAGCCCAGTAATGCTGGACTTGTTAGAAGTAGTCCTGATCATGTTGGTCGTCGACGTGGCGCGGATGGTGATGCTATTAGTATATTTGCTTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTAGAAGTAGTGATGGATTAATTGATATTATTCATGCTTCAACTGCTGTTACTATTTCTAACAATTACTTCACTCAGCATGACAAAGTTATGTTGCTAGGACACAATGATCAATACACCGCAGATAAAATAATGAAAGTAACAATAGTTTTCAATCGGTTCGCTGATGGACTAATCGAAAGAATGCCAAGGGTGAGATTTGGTTATGCACACGTGGTTAACAACAAATATGATGGGTGGAAAATGTATGCTATAGGAGGAAGTGCTAACCCAACTATTTTAAGTGAAGGGAACTTTTTTACAGCACCAAATGACCAAAATGCAAAACAGGTTACAAAGAGGGAAGCAAAGGGAAATTGGAAGAGCTGGAAATGGAGGTCTTCAAAGGATGCATTCTCAAATGGTGCTTATTTTGTGCCATCTGGTTATGGAAGTTGTGCACCAAATTATACACCTTCTCAATCTTTTGCGGCTGTTCCAGCTTATATGGTGCCGGCTATAACACTCAATGCAGGTCCATTGAATTGTTATGTTGGAAGGTCATGTTAA 1158 0.3748 MAISSSLLSLSFFLLTIALTFVNAYSKDYYYNTNKPRLNKIDSCWRAKPNWSSNRKALADCAIGFGKDAIGGKFGAIYIVTDSSDDPVNPKQGTLRYGAIQTTPLWIVFDRDMVIRLKNELIMNSYKTIDGRGVKVDIGNGPCITIQGVNHVIIHGISIHDCKPSNAGLVRSSPDHVGRRRGADGDAISIFASSNIWIDHCFLARSSDGLIDIIHASTAVTISNNYFTQHDKVMLLGHNDQYTADKIMKVTIVFNRFADGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSANPTILSEGNFFTAPNDQNAKQVTKREAKGNWKSWKWRSSKDAFSNGAYFVPSGYGSCAPNYTPSQSFAAVPAYMVPAITLNAGPLNCYVGRSC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05065 385 SUPERFAMILY Pectin lyase-like 59 385 IPR011050 -
Vifa4g05065 385 Pfam Pectate lyase 120 303 IPR002022 -
Vifa4g05065 385 Gene3D - 38 378 IPR012334 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Vifa4g05065 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Vifa4g05065 385 PANTHER PECTATE LYASE 18-RELATED 37 383 IPR045032 GO:0030570
Vifa4g05065 385 SMART amb_all 112 309 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05065 Vifa-Chr4 1586232666 1586234208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05065 11 385 Polysaccharide Lyase AT1G11920 66.321 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05065 K01728 - gmx:100807483 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g05065 4 1586232666 1586234208 Vifa4g05065 4 1586232666 1586234208 ECH