Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05062 ATGGAAGTAGTAGTTCCTAGACGAGAACGGTCCAATAAACGGACTGGTGATAAGTTGAAATTGTCTGGATGCTCAAAAGGTTTTGGAAGTTTAAAGAGAAAGCCTGAAGAAATTATTCATGAGCCTACAGTTGCACTAGAACAAGAATCAAACCAGGATACCGACAATAAGCTAAGCAAAATCCCAAGATGCTCAAAACATTTTGGAATTTCATATAAGAGAAGAACTCAAGAATTTCATAGTCATCGTAGCAATACAAATTCAGAAGGGGTAAAAGATGTTATGGAATGTTTAAAGGAGACATCCAATCTTCCATCTAAGAAAAGAGTTAAGCCAAAGAAGCGTGCTGCCTCAATCAAGAAACAGGAACTTGAAGATGATCTCTTGATGGATGATGTTGACCAAGATGATGAAATGTTTTTTCTTCTCAAGTCAAAGAGCAGGACCAGAACTGGTAGAAGCAATAACACCATGGGTGTTCAACAAAATACTCGGAAATGTCATCAGTGCCTGAAAAAGGAAAGAATGTCTTTTGTGCCATGTACGAAATGCAACAAAATGTACTGTATGCGATGCATCAACCAATGGTACCCCGATATGTCTATAGAAGAAGTTGCTGAAAGTTGCCCATTTTGTCGTAAAAATTGCAATTGCAACGTTTGCTTGCGTTCAAAAGGAACAATTAAGACATCTAACACGGAGATCACCAATTACGAAAAAGCTCAATATCTGCATTACATGATTAACTTACTCCATCCATATCTAAAACAAATTTGTCATGAACAAAGTCAAGAGGTAGATATTGAAGCCAAAATACAAGGAAAATCTTCTTCTGAGTTTGTGGTACCGCAAAGCTTTTGTTGGGACAATGAGCGTGTCTATTGTGATTATTGTGCTACCTCAATTATTGATCTTCATCGAAGCTGCCCCAGTTGTTCCTTTGAACTTTGCCTTAAATGTTGCCAAGAAGTTCGTGATGGAAGTATTACTCCCCGTGCTGAGATGAAATTCCCATATGTGAATAGGGGCTATGACTATATGCATGGTGGCGACCCCCTACCAATGTCTTGTGATTTAGAGACTTCAAATGGTCATCCTGAGATATCTACAAAGTGGAATGCCAAGGCTGATGGAAGTATTAGTTGTGCACTGAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAGGCGCAGCCTCCCGCATAGGTGGATGTCTGACTTGGAAGGCAAAGCTCACAATATGCTGAAAAATTGGGAAACTGAACAAACAACTCTTCAGAGGGAAGGAGCTGTGTCAAACTACAACTCAGGGAAAAAGGAATCTTTTTCAGAGTCAAGAGACATTTTAAAACAAGGGATGTCTCTCTTCCAAAAACATTGGGCTAATGGTGAACCGATTATTGTTCGTGATGTTCTAAAACAGGGTACAGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGTGCATTGTGTGATAATGTGGGTTCAGTTATGAGTTCAAAAATGTCAGATGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTGAAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGACGAACATATAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCTTCTGATAAATTTGAAGATCTTTTACCTCGTCATTGTGATGAATTTATCTATTCCTTGCCATTTCAACAATATACTGATCCTCGGGCTGGAATTCTCAATCTGGCTGTAAAGTTGCCAGGCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAGAGAAGAACTTGGTAGGGGAGACTCTGTGACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACAGCAGAGGTACGATTAACTGATGACCAGCATTCGGCTATTCCCAAATTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAAAACCGTGCTCCAGAAAGGGCTGCTATATGCCTAAATAGTCGACTTTGTGACAACAGAAAACATGAAACTAAAGAAGTGTTAGAATGTAACTATAGGGAGAACCTTCCTATTCAAATCAGTGGAGATATGTTTCGAAATGACGTGTCTGAGAAGGGCACTTTTGCTGCTACTTCTACAGAAAATGAAACGGTGGTAACAGGTAGTGCCCTGTGGGATATATTTCGAAGAGAGGACACTGAAAAGCTAGGAGCATATCTTAGAAAACACTCGAAAGAATTCAGACATACTTATTGTTCACAGATTGAAGAGGTTGTACATCCAATTCACGACCAGTGCTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCATGGACTTTTGAGCAAAAACTCGGCGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAGGTTGCTGCAGACTTTGTGTCCCCAGAAAATGTCCATGAGTGTCTTCGCTTGACTGAGGAATTCCGCCAGCTTCCAAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAAATGGTAGTTTATGCCGTTGATCAAGCTCTCAAAGACCTAGAGGCTTTACTCGATTCTTCTTGA 2640 0.4053 MEVVVPRRERSNKRTGDKLKLSGCSKGFGSLKRKPEEIIHEPTVALEQESNQDTDNKLSKIPRCSKHFGISYKRRTQEFHSHRSNTNSEGVKDVMECLKETSNLPSKKRVKPKKRAASIKKQELEDDLLMDDVDQDDEMFFLLKSKSRTRTGRSNNTMGVQQNTRKCHQCLKKERMSFVPCTKCNKMYCMRCINQWYPDMSIEEVAESCPFCRKNCNCNVCLRSKGTIKTSNTEITNYEKAQYLHYMINLLHPYLKQICHEQSQEVDIEAKIQGKSSSEFVVPQSFCWDNERVYCDYCATSIIDLHRSCPSCSFELCLKCCQEVRDGSITPRAEMKFPYVNRGYDYMHGGDPLPMSCDLETSNGHPEISTKWNAKADGSISCALKEMGGCGSSVLELRRSLPHRWMSDLEGKAHNMLKNWETEQTTLQREGAVSNYNSGKKESFSESRDILKQGMSLFQKHWANGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVGSVMSSKMSDVKAIDCMANCEVEINTRQFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIYSLPFQQYTDPRAGILNLAVKLPGHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVNILTHTAEVRLTDDQHSAIPKLKEAHKAQDERENRAPERAAICLNSRLCDNRKHETKEVLECNYRENLPIQISGDMFRNDVSEKGTFAATSTENETVVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSQIEEVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHECLRLTEEFRQLPKNHKAREDKLEIKKMVVYAVDQALKDLEALLDSS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05062 879 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g05062 879 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g05062 879 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 162 233 IPR018866 -
Vifa4g05062 879 ProSiteProfiles Zinc finger RING-type profile. 167 213 IPR001841 -
Vifa4g05062 879 SMART cupin_9 557 842 IPR003347 -
Vifa4g05062 879 SUPERFAMILY Clavaminate synthase-like 457 875 - -
Vifa4g05062 879 ProSiteProfiles JmjC domain profile. 576 842 IPR003347 -
Vifa4g05062 879 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 73 876 IPR045109 GO:0032454|GO:0033169
Vifa4g05062 879 Pfam JmjC domain, hydroxylase 718 825 IPR003347 -
Vifa4g05062 879 Gene3D Cupin 445 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05062 Vifa-Chr4 1586039315 1586043726 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa4g05062 JmjC 1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05062 K15601 - gmx:100797860 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g05062 4 1586039315 1586043726 Vifa4g05062 4 1586039315 1586043726 ECH