Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05061 ATGGAAGTAGTAGTTCCTAGACGAGAACGGTCCAATAAACGGACTGGTGATAAGTTGAAATTGTCTGGATGCTCAAAAGGTTTTGGAAGTTTAAAGAGAAAGCCTGAAGAAATTATTCATGAGCCTACAGTTGCACTAGAACAAGAATCAAACCAGGATACCGACAATAAGCTAAGCAAAATCCCAAGATGCTCAAAACATTTTGGAATTTCATATAAGAGAAGAACTCAAGAATTTCATAGTCATCGTAGCAATACAAATTCAGAAGGGGTAAAAGATGTTATGGAATGTTTAAAGGAGACATCCAATCTTCCATCTAAGAAAAGAGTTAAGCCAAAGAAGCGTGCTGCCTCAATCAAGAAACAGGAACTTGAAGATGATCTCTTGATGGATGATGTTGACCAAGATGATGAAATGTTTTTTCTTCTCAAGTCAAAGAGCAGGACCAGAACTGGTAGAAGCAATAACACCATGCAGGGTGTTCAACAAAATACTCGGAAATGTCATCAGTGCCTGAAAAAGGAAAGAATGTCTTTTGTGCCATGTACGAAATGCAACAAAATGTACTGTATGCGATGCATCAACCAATGGTACCCCGATATGTCTATAGAAGAAGTTGCTGAAAGTTGCCCATTTTGTCGTAAAAATTGCAATTGCAACGTTTGCTTGCGTTCAAAAGGAACAATTAAGACATCTAACACGGAGATCACCAATTACGAAAAAGCTCAATATCTGCATTACATGATTAACTTACTCCATCCATATCTAAAACAAATTTGTCATGAACAAAGTCAAGAGGTAGATATTGAAGCCAAAATACAAGGAAAATCTTCTTCTGAGTTTGTGGTACCGCAAAGCTTTTGTTGGGACAATGAGCGTGTCTATTGTGATTATTGTGCTACCTCAATTATTGATCTTCATCGAAGCTGCCCCAGTTGTTCCTTTGAACTTTGCCTTAAATGTTGCCAAGAAGTTCGTGATGGAAGTATTACTCCCCGTGCTGAGATGAAATTCCCATATGTGAATAGGGGCTATGACTATATGCATGGTGGCGACCCCCTACCAATGTCTTGTGATTTAGAGACTTCAAATGGTCATCCTGAGATATCTACAAAGTGGAATGCCAAGGCTGATGGAAGTATTAGTTGTGCACTGAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAGGCGCAGCCTCCCGCATAGGTGGATGTCTGACTTGGAAGGCAAAGCTCACAATATGCTGAAAAATTGGGAAACTGAACAAACAACTCTTCAGAGGGAAGGAGCTGTGTCAAACTACAACTCAGGGAAAAAGGAATCTTTTTCAGAGTCAAGAGACATTTTAAAACAAGGGATGTCTCTCTTCCAAAAACATTGGGCTAATGGTGAACCGATTATTGTTCGTGATGTTCTAAAACAGGGTACAGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGTGCATTGTGTGATAATGTGGGTTCAGTTATGAGTTCAAAAATGTCAGATGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTGAAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGACGAACATATAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCTTCTGATAAATTTGAAGATCTTTTACCTCGTCATTGTGATGAATTTATCTATTCCTTGCCATTTCAACAATATACTGATCCTCGGGCTGGAATTCTCAATCTGGCTGTAAAGTTGCCAGGCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAGAGAAGAACTTGGTAGGGGAGACTCTGTGACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACAGCAGAGGTACGATTAACTGATGACCAGCATTCGGCTATTCCCAAATTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAAAACCGTGCTCCAGAAAGGGCTGCTATATGCCTAAATAGTCGACTTTGTGACAACAGAAAACATGAAACTAAAGAAGTGTTAGAATGTAACTATAGGGAGAACCTTCCTATTCAAATCAGTGGAGATATGTTTCGAAATGACGTGTCTGAGAAGGGCACTTTTGCTGCTACTTCTACAGAAAATGAAACGGTGGTAACAGGTAGTGCCCTGTGGGATATATTTCGAAGAGAGGACACTGAAAAGCTAGGAGCATATCTTAGAAAACACTCGAAAGAATTCAGACATACTTATTGTTCACAGATTGAAGAGGTTGTACATCCAATTCACGACCAGTGCTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCATGGACTTTTGAGCAAAAACTCGGCGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAGGTTGCTGCAGACTTTGTGTCCCCAGAAAATGTCCATGAGTGTCTTCGCTTGACTGAGGAATTCCGCCAGCTTCCAAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAAATGGTAGTTTATGCCGTTGATCAAGCTCTCAAAGACCTAGAGGCTTTACTCGATTCTTCTTGA 2643 0.4056 MEVVVPRRERSNKRTGDKLKLSGCSKGFGSLKRKPEEIIHEPTVALEQESNQDTDNKLSKIPRCSKHFGISYKRRTQEFHSHRSNTNSEGVKDVMECLKETSNLPSKKRVKPKKRAASIKKQELEDDLLMDDVDQDDEMFFLLKSKSRTRTGRSNNTMQGVQQNTRKCHQCLKKERMSFVPCTKCNKMYCMRCINQWYPDMSIEEVAESCPFCRKNCNCNVCLRSKGTIKTSNTEITNYEKAQYLHYMINLLHPYLKQICHEQSQEVDIEAKIQGKSSSEFVVPQSFCWDNERVYCDYCATSIIDLHRSCPSCSFELCLKCCQEVRDGSITPRAEMKFPYVNRGYDYMHGGDPLPMSCDLETSNGHPEISTKWNAKADGSISCALKEMGGCGSSVLELRRSLPHRWMSDLEGKAHNMLKNWETEQTTLQREGAVSNYNSGKKESFSESRDILKQGMSLFQKHWANGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVGSVMSSKMSDVKAIDCMANCEVEINTRQFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIYSLPFQQYTDPRAGILNLAVKLPGHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVNILTHTAEVRLTDDQHSAIPKLKEAHKAQDERENRAPERAAICLNSRLCDNRKHETKEVLECNYRENLPIQISGDMFRNDVSEKGTFAATSTENETVVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSQIEEVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHECLRLTEEFRQLPKNHKAREDKLEIKKMVVYAVDQALKDLEALLDSS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05061 880 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g05061 880 Gene3D Cupin 446 852 - -
Vifa4g05061 880 ProSiteProfiles Zinc finger RING-type profile. 168 214 IPR001841 -
Vifa4g05061 880 Pfam JmjC domain, hydroxylase 719 826 IPR003347 -
Vifa4g05061 880 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g05061 880 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 163 234 IPR018866 -
Vifa4g05061 880 SUPERFAMILY Clavaminate synthase-like 458 876 - -
Vifa4g05061 880 SMART cupin_9 558 843 IPR003347 -
Vifa4g05061 880 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 72 877 IPR045109 GO:0032454|GO:0033169
Vifa4g05061 880 ProSiteProfiles JmjC domain profile. 577 843 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05061 Vifa-Chr4 1586039315 1586043726 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa4g05061 JmjC 1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05061 K15601 - gmx:100797860 1182.93