Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05054 ATGAAAGCCTCAAAGCAACAAAGACGATGCAAATCCTTGTGTTGTAGTAGCAACAGGTATAGTGTCTCTTCTTCAGAAGAAGCAGAAAGTTCATCTTCTTCTTCTGTCTCTAATAAGTTCCCTTCCGTTTCTACACTAGCACATGCCATGGTGCAAGAGAGACTTGACCAAATGATTAGAGAAAAGCTTGAAACTGGACATGTAGAGAGAAAAATGGAGAAGAAAAGAGAAGGAACAAAGTTTGTTGTAATGTTAGCTATGGAAAAGTGTTCTTATGATCCTAGAGAAGATTTTAGGGAATCAATGATGGAGATGATAACGGTGAATAGCCTTCGAGACGCGAAAGATCTTCGTAGTTTATTGAACTATTATGTGTCAATGAATTCGCAAGAATATCATAGTCTTATACTTGAGATTTTTCATGAGGTTTGCACTAATTTGTTCTTATCATGTAAATGCAAATGGTAG 468 0.3654 MKASKQQRRCKSLCCSSNRYSVSSSEEAESSSSSSVSNKFPSVSTLAHAMVQERLDQMIREKLETGHVERKMEKKREGTKFVVMLAMEKCSYDPREDFRESMMEMITVNSLRDAKDLRSLLNYYVSMNSQEYHSLILEIFHEVCTNLFLSCKCKW 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05054 155 ProSiteProfiles OVATE domain profile. 87 146 IPR006458 -
Vifa4g05054 155 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 24 148 IPR038933 GO:0045892
Vifa4g05054 155 NCBIfam uncharacterized plant-specific domain TIGR01568 86 148 IPR006458 -
Vifa4g05054 155 Pfam Transcriptional repressor, ovate 91 148 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05054 Vifa-Chr4 1583070037 1583070504 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa4g05054 Ovate 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05054 - - var:108330150 197.208