Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g05053 | ATGAGTCAACTCGGTCTCATATTACACGAATCGCTCCGTCCTCAAAGAGAAGCAAGAACCTTACTCGGTTTACTAACAGAACAAATGGACGGTGCAGATTCATCAACTACAAGAAGACGTAGTCTGAAAGAACGGTTCAGATTCACCGGTATCGGTGGTTGCTGTGGTGCCACCTGGGTTTTCCGTCCAATTATCAGACACGAACACCACCAACAACAACAACAACGACAACAAGAGGAAGCAAGAGGAGAAGGAGAAACTAATGTGGAGCAACAAGAACTACAGGTTCAAGATCCGAATCCGGATCCGTCTAGTTCTTCTGGGATGAATCTTGCGGCGGCATTGGCGGCGGAGCGTCAGATGAGAGGTTCGGAGGAAACTGGCGGCGGCGAAAGAGCGACGCCGTGGAGAGTTTCGTTGATGAAACTGTTGGAGGAAACGGAAGTGGAAAGTGAGAGTACGACGACGACGGTTACGGAGGGGAGTGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGTAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGGAACTGTCCCCTTTGTAATCGTTCTATTCTTGAGATTCTCGATATTTTCTGA | 645 | 0.4899 | MSQLGLILHESLRPQREARTLLGLLTEQMDGADSSTTRRRSLKERFRFTGIGGCCGATWVFRPIIRHEHHQQQQQRQQEEARGEGETNVEQQELQVQDPNPDPSSSSGMNLAAALAAERQMRGSEETGGGERATPWRVSLMKLLEETEVESESTTTTVTEGSDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g05053 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 213 | IPR013083 | - | |
| Vifa4g05053 | 214 | Pfam | Zinc finger, C3HC4 type (RING finger) | 163 | 208 | - | - | |
| Vifa4g05053 | 214 | CDD | RING-HC | 166 | 203 | - | - | |
| Vifa4g05053 | 214 | MobiDBLite | consensus disorder prediction | 70 | 87 | - | - | |
| Vifa4g05053 | 214 | MobiDBLite | consensus disorder prediction | 70 | 108 | - | - | |
| Vifa4g05053 | 214 | SMART | ring_2 | 166 | 203 | IPR001841 | - | |
| Vifa4g05053 | 214 | ProSiteProfiles | Zinc finger RING-type profile. | 166 | 204 | IPR001841 | - | |
| Vifa4g05053 | 214 | SUPERFAMILY | RING/U-box | 157 | 211 | - | - | |
| Vifa4g05053 | 214 | PANTHER | OS01G0917900 PROTEIN | 7 | 214 | - | - | |
| Vifa4g05053 | 214 | MobiDBLite | consensus disorder prediction | 88 | 108 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g05053 | Vifa-Chr4 | 1582355280 | 1582355924 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g05053 | 21 | 214 | C3H Transcription Factor Family | AT4G22250 | 52.657 | 2.87e-58 | 181 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g05053 | - | - | mtr:11446421 | 304.679 |