Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05050 ATGGGGAAATCAGGGGGTAGAAGGAAGAAAGGTGGTGCTGCTGTTGTTGTTGATAATTCAGTTTCTGCACAAACTCCGAACGGTGGTGTTGAATTGGATTCATCAATTTTTTTGAAAAAGGCGCATGAAATGAAGGAAGAAGGGAATAGGAGATTTCAGAGTAAGGATTATGCTGGTGCTCTTGAACACTATGAGAATGCTCTTAAACTCACGCCCAAAATTCATCCCGACAGAGCTGTTTTTCATAGCAATAGGGCTGCTTGTTTGATGCAAATGAAGCCGATTGATTATGAGTCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCGTTGTTTGTTCGGGCTCTTCTTCGGCGGGCTCGGGCGTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTGCAGGATGTGCAGTTGTTGTTGGCTTCTGATCCTAATCATAAGGATGCTTTGGATATTGCTCAGAGATTGAGGGCTGCGGTTGGGCCTCGTCAGGAAGCTCAGCAGGATCTTCACAGTCGGCCGTCTCCTGCTGCTCTTGGTGCTTCAGCTGTCCGTGGTGCTCCTATTGGGGGGTTAGGTCCGTGTTTGCCTGCGCGGCCTGGCTCAAAGAAGGGGGTGAATTCTGGAGTTGGGGCTGTTGTTTCTCCTAATAACAAGGTTGACAAGTCTCAGAATGTTTTACTGCCTGCTGAAAATGGCCCGGGGACAACTAAGCGTCAGCAGAATGTTGTGTTGAAGCCTTTAAGTAATGGTCCTGCAGTGCAATGTAACTCGAAAGATGTGAACCAGAAGGATACTCATGGGCAGCTGTCGGAGATTGCTATTCGGTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTTGCTCAGATGCCGGTGAAATGCAGTTTCAGAGTACTGAGAGATGTGGTAAGCAAAAGATTTCCTTCGTCGAATTCAGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGGTTACTATAACCTCTACGGATGAACTCCGATCGGCAGAGTCTTTTGTTGATAGTTATTTGCTGAAAGAGCCTGAATCGGATAAAAGTGATTCCATTTCGGTGCTGAGACTTCATATTGTTGAGGTTAGTCCGGAACAGGAGCCAACTTTGTTGGAAGAAGAGGAAGAAAAACTCGTTGAGAATGAAGTGACCAAGGGAGATGAGAGTGGATCTCATTCTTCCCTCGGTGAATCTGTCCCTGAAGTTACGGAAGTTACCGAGGTTGACAAGACAGCAAAGAAGGATGCTTCCAAGGAAAAGCCGGGAGCCACTGGAGATAATGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGACCCGGATGCTCATATTGACTTGCATGAACTTGGGATGGAGCTTTGTTCAGAGGCACTTGAAGAAACAGTAACTAGTGAGGAGGCTCAGGATTTATTTGACAAGGCCGCATCGAAGTTCCAGGAGGTGGCAGCATTAGCATTCTTCAACTGGGGTAATGTACACATGTGCGCTGCTAGGAAGCGGATTCCCTTAGATGAAACTGCTGGAAAAGAGGTAGTGGCAGAACAACTTCAAGTGGCTTATGACTGGGTCAAGGAAAAGTATTCCTTGGCAAGAGAAAAATACGAGGAAGCACTCTTGATCAAACCGGATTTCTACGAGGGGCTGTTGGCTCTGGGCCAGCAACAATTTGAAATGGCCAAACTCCATTGGTCTTTTGCAATTGCTAAGAAGATAGATTTAACAACCTGGGATCCAACAGAAACTCTTCAATTGTTTAATAGTGCGGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAGTTGGAGGAACAGAGAGCAAAGGAGCTAAAAGACCCAAATGCAACCAAGAAAGAAGAATTATTGAGAAGAAGGAAGAAACATGGCAGTACTACTGAAGGCGAGGCTTCTGGTGTTGGCGGTCAGACTGAGGTATCGGCTGAAGAAGCCGCTGAGCAAGCAGTGGTCATGAGATCACAGATTCATCTCTTTTGGGGCAATATGCTTTTCGAAAAATCCCAAGTTGAATGCAAATTAGGAATGGATGGTTGGAAGAAAAATCTCGATGCTGCAACAGAAAGGTTTAAGCTTGCAGGAGCTTCTGAGGCTGATATTTCAATGGTTCTAAAGAATCATTCTTCAAATGGCGGTGATACAAAAGGTGATGATAAAAAGGTTCAGAGTCCACTTCCCAACAAGACCGGTGAACTAGAGATCAATAAGGCAAATCAAGAATGA 2304 0.4518 MGKSGGRRKKGGAAVVVDNSVSAQTPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALEHYENALKLTPKIHPDRAVFHSNRAACLMQMKPIDYESVISECTLALQVQPLFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAVGPRQEAQQDLHSRPSPAALGASAVRGAPIGGLGPCLPARPGSKKGVNSGVGAVVSPNNKVDKSQNVLLPAENGPGTTKRQQNVVLKPLSNGPAVQCNSKDVNQKDTHGQLSEIAIRWRPLKLVYDHDIRLAQMPVKCSFRVLRDVVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRSAESFVDSYLLKEPESDKSDSISVLRLHIVEVSPEQEPTLLEEEEEKLVENEVTKGDESGSHSSLGESVPEVTEVTEVDKTAKKDASKEKPGATGDNECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDETAGKEVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLTTWDPTETLQLFNSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKHGSTTEGEASGVGGQTEVSAEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADISMVLKNHSSNGGDTKGDDKKVQSPLPNKTGELEINKANQE 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05050 767 SMART tpr_5 115 148 IPR019734 GO:0005515
Vifa4g05050 767 SMART tpr_5 79 114 IPR019734 GO:0005515
Vifa4g05050 767 SMART tpr_5 41 74 IPR019734 GO:0005515
Vifa4g05050 767 PANTHER PROTEIN CLMP1 1 755 IPR044517 -
Vifa4g05050 767 CDD PB1 282 368 - -
Vifa4g05050 767 MobiDBLite consensus disorder prediction 163 185 - -
Vifa4g05050 767 SMART PB1_new 279 371 IPR000270 GO:0005515
Vifa4g05050 767 MobiDBLite consensus disorder prediction 390 437 - -
Vifa4g05050 767 Gene3D - 281 348 - -
Vifa4g05050 767 SUPERFAMILY TPR-like 38 172 IPR011990 GO:0005515
Vifa4g05050 767 MobiDBLite consensus disorder prediction 627 668 - -
Vifa4g05050 767 MobiDBLite consensus disorder prediction 731 767 - -
Vifa4g05050 767 ProSiteProfiles PB1 domain profile. 279 371 IPR000270 GO:0005515
Vifa4g05050 767 SUPERFAMILY TPR-like 487 583 IPR011990 GO:0005515
Vifa4g05050 767 MobiDBLite consensus disorder prediction 627 654 - -
Vifa4g05050 767 Gene3D Tetratricopeptide repeat domain 31 174 IPR011990 GO:0005515
Vifa4g05050 767 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Vifa4g05050 767 SUPERFAMILY CAD & PB1 domains 278 343 - -
Vifa4g05050 767 Pfam PB1 domain 279 370 IPR000270 GO:0005515
Vifa4g05050 767 Coils Coil 607 627 - -
Vifa4g05050 767 MobiDBLite consensus disorder prediction 412 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05050 Vifa-Chr4 1581740251 1581742554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05050 38 159 Calmodulin-binding Proteins AT3G25230 30.075 7.96e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05050 K26538 - gmx:100786963 1146.72