Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05040 ATGAAACTCGATAACTCCAATTCCAATTCCAACGGCCAGATCTCCTTCCCCGCCGCCGTCGTCGATGTTACTCCGCCGCATAACTCCGATGACGCTGATGAAGCATTCGTGCCGCCGCTGAATTTTGCGATGGTTGATAACGGTATTTTCAGGTCCGGATTTCCGGATTCTGCGAATTTTGGATTCATGAAATCGCTTCGTCTTCGTTCCATAATATGTTTGTGCCCTGAGCCCTATCCAGAAGCCACTGCGGAGTTTTTGAAGGCTAATGGAATTAGGCTTTATCAATTTGGTATTGATGGTTGTAAGGAACCCTTTGTCAACATCCCAAATGATAAGATTCGCGAAGCTTTGAAAGTAGTGCTCGATGTTAGGAACCATCCTGTGCTGATTCATTGCAAACGAGGGAAGCATCGCACTGGTTGTCTTGTGGGATGCATAAGAAGATTGCAGAGGTGGTGTCTATCATCAATTTTCGACGAGTATCAAAGATTTGCAGCTGCCAAAGCTAGAGTCTCAGACCAGAGGTTCATCGAACTATTTGATATTTCCAGTTTGAAGCACAACCCACTGTCATTTTCATGCTCAAGGAAATAG 597 0.4506 MKLDNSNSNSNGQISFPAAVVDVTPPHNSDDADEAFVPPLNFAMVDNGIFRSGFPDSANFGFMKSLRLRSIICLCPEPYPEATAEFLKANGIRLYQFGIDGCKEPFVNIPNDKIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQRWCLSSIFDEYQRFAAAKARVSDQRFIELFDISSLKHNPLSFSCSRK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05040 198 ProSitePatterns Tyrosine specific protein phosphatases active site. 131 141 IPR016130 GO:0016311|GO:0016791
Vifa4g05040 198 ProSiteProfiles Dual specificity protein phosphatase domain profile. 41 195 IPR020422 GO:0006470|GO:0008138
Vifa4g05040 198 Gene3D Protein tyrosine phosphatase superfamily 35 185 IPR029021 -
Vifa4g05040 198 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 183 IPR029021 -
Vifa4g05040 198 PRINTS Plant and fungal dual specificity phosphatase signature 36 53 IPR020428 GO:0016791
Vifa4g05040 198 PRINTS Plant and fungal dual specificity phosphatase signature 73 86 IPR020428 GO:0016791
Vifa4g05040 198 PRINTS Plant and fungal dual specificity phosphatase signature 92 106 IPR020428 GO:0016791
Vifa4g05040 198 PRINTS Plant and fungal dual specificity phosphatase signature 109 123 IPR020428 GO:0016791
Vifa4g05040 198 FunFam probable tyrosine-protein phosphatase At1g05000 35 185 - -
Vifa4g05040 198 PANTHER TYROSINE-PROTEIN PHOSPHATASE 35 189 - -
Vifa4g05040 198 Pfam Tyrosine phosphatase family 37 190 IPR004861 -
Vifa4g05040 198 CDD PFA-DSP_Siw14 36 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05040 Vifa-Chr4 1579597550 1579600504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05040 15 198 Protein tyrosine phosphatase (PTP) family AT4G03960 70.588 1.45e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05040 K18045 - gmx:100785520 337.035