Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05037 ATGAGCTTTGCTAGAACTTCAATGGCAGGTTCATGGTTCACCAAGCTTCGCATGCGAAGGTCTAAGAGTAATAAACCTTTACCAGAACCGTCTTCATCTTCTAAGACTCGGTTGAATTGTGACGCAGACAACATGGAAAGAAAAAGATTTGATAGCTTAGAGTCATGGTCCATGATATTGGACTCTGAGAATGTCGAAACATGGGAAGCATCAAAGGAGGATCAGGAAGAATGGACCGCCGATCTTTCTCAGCTTTTCATAGGTAACAAGTTTGCGTCTGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAAAGAGCTGTTGCTGTTAAAATGGTGAGGATTCCTAATCAGAATGAAGAGAGAAGAACATTGCTAGAACAGCAATTCAAATCTGAAGTTGCTTTACTCTCACGTCTCTTTCATCCTAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCACCTGTGTACTGTATAATAACAGAATACATGTCACAAGGAACTCTAAGGATGTATCTGAACAAGAAAGAGCCATACTCTCTTTCGATTGAAACTGTGCTAAGGTTAGCACTTGACATATCAAGAGGTATGGAATACCTTCATTCACAAGGTGTGATTCATAGAGACCTCAAATCAAATAACTTGCTTCTCAATGACGAGATGAGGGTTAAGGTTGCGGATTTCGGGACATCATGTCTTGAAACACGATGCCGAGAGACTAAAGGAAATATGGGAACTTATCGTTGGATGGCGCCAGAGATGATTAAGGAAAAACCTTATACTCGTAAGGTTGATGTTTATAGTTTTGGAATTGTGCTCTGGGAACTTACAACTGCTCTGCTTCCTTTTCAAGGAATGACTCCGGTGCAAGCTGCTTTTGCTGTTGCTGAGAAGAACGAAAGGCCTCCAGTACCTGCAAGTTGTCAGCCAGCTCTTGCGCATCTAATAAAGCGTTGCTGGTCAGCAAATCCTTCAAAGAGACCAGATTTCAGCGATATTGTGTCTACTCTTGAGAGGTACGATGAATGCGTGAAAGAAGGTCTTCCTCTAACTTATCATTCAGGACTAGTCACCAAAAACTTCATAATCGAGCGCTTAAAAGGTTGCGTCCCCATGAGCTCCTCCATACCTGTAAATGCTTAA 1149 0.4186 MSFARTSMAGSWFTKLRMRRSKSNKPLPEPSSSSKTRLNCDADNMERKRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEERRTLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPVPASCQPALAHLIKRCWSANPSKRPDFSDIVSTLERYDECVKEGLPLTYHSGLVTKNFIIERLKGCVPMSSSIPVNA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05037 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vifa4g05037 382 MobiDBLite consensus disorder prediction 19 39 - -
Vifa4g05037 382 Gene3D Phosphorylase Kinase; domain 1 74 167 - -
Vifa4g05037 382 FunFam serine/threonine-protein kinase HT1 168 361 - -
Vifa4g05037 382 Pfam Protein tyrosine and serine/threonine kinase 87 339 IPR001245 GO:0004672|GO:0006468
Vifa4g05037 382 PRINTS Tyrosine kinase catalytic domain signature 163 176 IPR001245 GO:0004672|GO:0006468
Vifa4g05037 382 PRINTS Tyrosine kinase catalytic domain signature 266 288 IPR001245 GO:0004672|GO:0006468
Vifa4g05037 382 PRINTS Tyrosine kinase catalytic domain signature 310 332 IPR001245 GO:0004672|GO:0006468
Vifa4g05037 382 PRINTS Tyrosine kinase catalytic domain signature 247 257 IPR001245 GO:0004672|GO:0006468
Vifa4g05037 382 PRINTS Tyrosine kinase catalytic domain signature 201 219 IPR001245 GO:0004672|GO:0006468
Vifa4g05037 382 ProSiteProfiles Protein kinase domain profile. 85 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g05037 382 SUPERFAMILY Protein kinase-like (PK-like) 63 339 IPR011009 -
Vifa4g05037 382 SMART serkin_6 85 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g05037 382 FunFam Serine/threonine-protein kinase isoform 1 75 167 - -
Vifa4g05037 382 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 78 342 - -
Vifa4g05037 382 MobiDBLite consensus disorder prediction 25 39 - -
Vifa4g05037 382 Gene3D Transferase(Phosphotransferase) domain 1 168 350 - -
Vifa4g05037 382 CDD STKc_MAP3K-like 92 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05037 Vifa-Chr4 1579037351 1579039276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05037 8 382 MAP Kinase Kinase Kinase AT1G62400 82.308 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa4g05037 PK_Tyr_Ser-Thr 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05037 - - gmx:100799437 712.605