Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05023 ATGACTCCGATCGAAACCCCTATTCAACCACAACAACAGCAACGTTCATCGACGAAGCGAAAATTAGACGATGACGACGAAAGCGTGTTAGATGATGACTTAGTGTATGTGAGAATGAGAAAAGCGGAGACCACAGAAACAACAGTTAAGCCGTGGAGCGGTGGAGGTTGCCGTGCTGGCGGTGGCGACGGAAACAACAATTTATTGAAGAATAGAGGACCTGTTTGTTTTTTCATTCGCATGGTTTCAGAAGGTTATAGTGTTGTGATGAACGCTTTTCCGGAAAACACTGTGCAATCGATTCATGAACGGATATATGAAATGAAGAGAATTCCTGTTTTTGAGCAGAGGTTGATTTTCAAAGGTAAACAGCTTCAGTGGGAACAAACTCTGGCGGAGTGTGGGATACAGAAAGATGTGATTCTTGAACTAGTTGGTCGAATGCGGAGTACTGAACATCCTCAAGCGTGGCAAGTTGTGAATGATATGGTTACTATTGTTTATGATCTTTGTGTTGGTGGGAATGTTCAGGATCCTGTTAAAACTGTGAAGAATTTACTCACTACTTATATTAATTTGGCTTTGGAACCAAAACCTAAACTTGATGCTGATTCTGCTACTAAGTATTTCCAGATTTTCATGAATTGTTCGGCTATTTCGATTCTGGTTACTCTCTATGTTTCGCCTTTTACAGGCTGCGCGTGTGGCGTTGGAGTTTTGTAA 723 0.4163 MTPIETPIQPQQQQRSSTKRKLDDDDESVLDDDLVYVRMRKAETTETTVKPWSGGGCRAGGGDGNNNLLKNRGPVCFFIRMVSEGYSVVMNAFPENTVQSIHERIYEMKRIPVFEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIVYDLCVGGNVQDPVKTVKNLLTTYINLALEPKPKLDADSATKYFQIFMNCSAISILVTLYVSPFTGCACGVGVL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05023 240 Gene3D - 70 152 - -
Vifa4g05023 240 ProSiteProfiles Ubiquitin domain profile. 75 151 IPR000626 GO:0005515
Vifa4g05023 240 PANTHER UBIQUITIN 84 151 - -
Vifa4g05023 240 MobiDBLite consensus disorder prediction 1 27 - -
Vifa4g05023 240 SUPERFAMILY Ubiquitin-like 77 162 IPR029071 -
Vifa4g05023 240 PRINTS Ubiquitin signature 128 149 IPR019956 -
Vifa4g05023 240 PRINTS Ubiquitin signature 86 106 IPR019956 -
Vifa4g05023 240 PRINTS Ubiquitin signature 107 127 IPR019956 -
Vifa4g05023 240 MobiDBLite consensus disorder prediction 1 16 - -
Vifa4g05023 240 SMART ubq_7 75 147 IPR000626 GO:0005515
Vifa4g05023 240 Pfam Ubiquitin family 78 149 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05023 Vifa-Chr4 1576733802 1576734607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05023 77 149 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.616 2.28e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05023 - - gmx:100789233 228.024