Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g05005 ATGCAATCGTCACGGGAAGGACCGAATTCAGCCGGTCTCAATTTCTACCACCAACCTGGTCAGGGAATTTATCTACAAGGCAATCTATGTGTTGATAGACATGGTAGCAGCAGCCAGGGAACTGGTTTTGCTTTCGAAACTAGAAAGGAGCAATGCTTCCCGCTAGAGTCATACCCAGAAATTGTTGGTTTCATGGATTGTGATTCCCCTTCCTATGCCAGTGTATCATCTAACAAGAGTCCATTTTCTCCGCAAGATTCTCAGTCTGGCTATTCAGATCACCACCAGTCATCTGACAACACGTATGGATCACCGATAAGCGGGATGTCTAGTGTTGATGATGGCAATGATTTGAAACACAAGCTTAGAGAACTGGAGAATTCGTTATTGGGGCCTGATGATTTCGATATTGTTGACAGCTACGGAAGCAGCATGGAGGCTAGTCTCCACGGAGCATGTCCGTCAGCGAAATATAATTGGGATCTGATTGCCGAAAATATTCCAAAGCTTGACTTGAAAGAAGTCCTCTTGCTATGTGCACAAGCTGTGTCTGATGGTGATATTCCCACAGCAAGAGGCTGGATGGATAATGTATTGGTGAAGATGGTGTCGGTAGCCGGAGAACCAATCCAGAGGTTAAGTGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAATCGTCCGGAATCTTGATCTACAAGGCCTTGAAATGTGAACAACCAACAAGCAAAGAGCTAATGAGTTACATGCACACACTGTATCAGATTTGCCCATATTTTAAATTTGCATACGTATCTGCAAATGCTGTTATTCATGAAACAATGGCAAATGAATCCCGGATTCATATAATTGATTTCCAAATCGCACAAGGCACACAATGGCATTTACTTATTCAAGCTCTTGCACACAGACCTGGCGGACCCCCTTTCATTCGAGTAACAGGTGTTGATGATTCCCAATCACTTCATGCTCGCGGTGGAGGACTTCAGATTGTAGGACAACGGCTTTCAGATTTCTCCAGATCTTGCGGAGTTCCGTTTGAGTTCCATATTGCTGCAATGTCTGGTTGCGAAGTTCAAAAAGAAAATCTCGGTATTAGGCCCGGGGAAGCCCTTGCTGTAAATTTGCCTTATATTTTGCACCACATGCCAGATGAGAGTGTGAGCATAGAGAATCATAGAGACAGATTACTGAGATTGGTTAAAAGCTTGTCTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCTTTCTTTCACAGGTTTGTCGAGACAATGGATTATTACACAGCTATGTTTGAATCAATAGACGTTGCTTGCGCCAAAGACGATAAGAAACGGATTAGTACAGAGCAGAACTGCGTTGCACGGGACATTGTCAACATGATAGCCTGTGAGGGGATTGAGAGGGTGGAGAGGCATGAACTTTTCGGAAAGTGGAGGATGAGATTTTCCATGGCAGGATTTAAACAATGCCAATTGAGTTCTTCAGTGATGCATTCTGTCGAAAATATGTTGAAGGACTTCAATCAAAACTACAGACTGGAACATCGAGACGGCGCTCTCTATCTTAACTGGATGAAGAGAGCTATGGCCACTTCTTCTGCTTGGAGGTGA 1632 0.44 MQSSREGPNSAGLNFYHQPGQGIYLQGNLCVDRHGSSSQGTGFAFETRKEQCFPLESYPEIVGFMDCDSPSYASVSSNKSPFSPQDSQSGYSDHHQSSDNTYGSPISGMSSVDDGNDLKHKLRELENSLLGPDDFDIVDSYGSSMEASLHGACPSAKYNWDLIAENIPKLDLKEVLLLCAQAVSDGDIPTARGWMDNVLVKMVSVAGEPIQRLSAYLLEGLRARLESSGILIYKALKCEQPTSKELMSYMHTLYQICPYFKFAYVSANAVIHETMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRVTGVDDSQSLHARGGGLQIVGQRLSDFSRSCGVPFEFHIAAMSGCEVQKENLGIRPGEALAVNLPYILHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGIERVERHELFGKWRMRFSMAGFKQCQLSSSVMHSVENMLKDFNQNYRLEHRDGALYLNWMKRAMATSSAWR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g05005 543 MobiDBLite consensus disorder prediction 75 115 - -
Vifa4g05005 543 MobiDBLite consensus disorder prediction 75 111 - -
Vifa4g05005 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 121 533 IPR005202 -
Vifa4g05005 543 ProSiteProfiles GRAS family profile. 163 543 IPR005202 -
Vifa4g05005 543 Pfam GRAS domain family 172 543 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g05005 Vifa-Chr4 1572213247 1572214878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g05005 1 543 GRAS Transcription Factor Family AT4G17230 57.509 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa4g05005 GRAS 4.4e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g05005 - - gmx:100776109 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g05005 4 1572213247 1572214878 Vifa4g05005 4 1572213247 1572214878 ECH
Vifa4g05005 4 1572213247 1572214878 Vifa1g09812 1 1596682791 1596684431 PCT