Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04998 ATGGGAAGTGATGAGACTCAACGGTTATTGCTTTCAGAGACAAGGGACCGTTCTCATGTCAATGAGAAAAGTGACCTTCTTCAGAGAAGACGAACGCGGCGTGGTGGCACTTCAGACACAGAGATTGAACAGAATGGTGACCTCCAAACCCCTTTACACCCTCAATCAATATATGAAACACAAGAAGCAGAACTCAACTTCAAGCCAGTATTCTTCTATTTAGCAGCATACTTAGGTACAGGCACCTTATGTTTCTTTCTGGCAAGTTACCAAATTCAAGGCATAAAAACATATGGTTTTCTTGATGCTCTTTATTTCTGTGTCGTCACGATGACAACCGTTGGATATGGCGATCTCGTTCCTAATAGTACTATAGCGAAACTACTTGCTTGCCTTTATGTCTTCACTGGTATGGCTCTTGGTGGCTTGATTCTTAGCAAAGCAGCAGATTACATTGTTGAAAAACAGGAAGTGTATCTTGTTAAAGCAATATGCAAAGCCGAGAAACTCGGTCTAGAAGAGGTTTCTAAAGAACTTGTGACTAAGAAAAGCAAATACAAGTTTCTGCTTTCAATATCCACTTTTGTTGTACTCATGATTACAGGAACTGTTTTTCTGTATTTTGTTGAGAAACTAGATTTCGTCGATGCATTCTATTGTGTTTGTTCGACGGTTACGACTTTAGGTTACGGAGATAAGAGCTTCTCAACTCCTATTGGTAGGACTTTTGCTGTGTTTTGGATATTAAGCAGCACCATTTGCTTGGCTCAGTGTTTTGCATATCTTGCTGATTTTTATACGGAAGATAGACAAAGATCATTGGCGAAAATGGTTCTCACGCGAAAGTTTTCGCCCCGTGATCTTGAGGCAGCTGATCTTGACGGAGACAAAGCTGTCAGTGCTGCAGAGTTTGTTTTGTACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATGTTATAGCCGTGATGGAGATTTTTAGAAAACTAGATTATGATCAATCAGGAACTCTGACTGAAGCTGATTTCAGAAACTCTTAA 1041 0.4006 MGSDETQRLLLSETRDRSHVNEKSDLLQRRRTRRGGTSDTEIEQNGDLQTPLHPQSIYETQEAELNFKPVFFYLAAYLGTGTLCFFLASYQIQGIKTYGFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACLYVFTGMALGGLILSKAADYIVEKQEVYLVKAICKAEKLGLEEVSKELVTKKSKYKFLLSISTFVVLMITGTVFLYFVEKLDFVDAFYCVCSTVTTLGYGDKSFSTPIGRTFAVFWILSSTICLAQCFAYLADFYTEDRQRSLAKMVLTRKFSPRDLEAADLDGDKAVSAAEFVLYKLKEMGKINQEDVIAVMEIFRKLDYDQSGTLTEADFRNS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04998 346 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa4g04998 346 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa4g04998 346 SUPERFAMILY EF-hand 287 345 IPR011992 -
Vifa4g04998 346 Gene3D - 64 158 - -
Vifa4g04998 346 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 68 320 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa4g04998 346 MobiDBLite consensus disorder prediction 9 40 - -
Vifa4g04998 346 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Vifa4g04998 346 MobiDBLite consensus disorder prediction 1 51 - -
Vifa4g04998 346 Gene3D - 288 346 - -
Vifa4g04998 346 Gene3D - 169 272 - -
Vifa4g04998 346 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Vifa4g04998 346 Pfam Ion channel 195 267 IPR013099 -
Vifa4g04998 346 Pfam Ion channel 75 153 IPR013099 -
Vifa4g04998 346 SUPERFAMILY Voltage-gated potassium channels 67 154 - -
Vifa4g04998 346 ProSiteProfiles EF-hand calcium-binding domain profile. 318 346 IPR002048 GO:0005509
Vifa4g04998 346 SUPERFAMILY Voltage-gated potassium channels 181 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04998 Vifa-Chr4 1570016371 1570017485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04998 49 342 Ion Channels AT5G55630 57.483 1.79e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04998 K05389 - gmx:100799492 484.567