Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04992 ATGGGTTTTCTCAATCTTTCTTGCATAGCTGAATCTTCAATCTCAACCTCAAATTCTGCCACATCTTCAAAACCAAGCAAGATCCAACACTTTCACTACAGTGACCTTGAAGCTGCAACCAATGGTTTCTCAGACAACAAACTTCTTGGCAAAGGAAGCCATGGTTATGTCTACAAAGCAATTCTCCGTGGTAAGCCTGTAGCTGTCAAAAGACCATCTAGACCTCACTCTCTTCTCCATCCTAACAGACCCGTCTCAGCATCTTCCCCTGAAATCACCAATGAAGTTGATAATGAAATCGATATCTTGTCCAAAATTCAAAGCCCCAGGTTGGTTAATCTTGTTGGTTTCACCAATGATTCAAAAGATAGGCTTTTGGTTGTTGAGTTTATGAGCAATGGTACACTTTTTGATGTTCTTCATTCTTCTAATAGAACGCTTAATTGGGGTAGAAGAATTCGTTTAGCTTTGCAAACTGCTAAAGCTGTTGATGTTCTTCATTCATCAAACCCGCCTGTCATTCATAGAGATATTAAATCTGCTAATGTTCTTATTGATCAAGATTATAATGCTAGGTTAGGTGATTTTGGTTTAGCACTTAGGGGTTTTGATAGGATAAGGTCAACTCCACCGGCCGGTACTATGGGCTATCTTGATCCTTTTTATGTAACACCTGATAATTTGAGTACTAAGATTGATGTTTTTAGTTTCGGGATTTTGTTGTTGGAGATTATAAGTGGAAGGAAAGCAATTGATGTTGCTTATTCGCCACCATCCGTTGTGGATTGGGCTATTCCACTTATTAAGAAAGGCAAGTTTTTTACTGTTTATGATCCTAGAATAGCACCTCCTAAGGATCCTGTTGTGAGGAAACAATTGGTTTTGATTGCGGCCAAATGTGTTAGGTCTTGTCGGGAAAGAAGGCCTTCTATGAATGAGGTTGTTAATTGGCTTTGTGGGTTGTGTAAATTGGTTCCAAATCATTCGTGGAATGGTTTCAATAATCCTTGTATGATGGTTGAAACTGTCGGGCGTCCAATTGAACCAAGAAATGGCCAGGTCAGTTCGAGGTTTGCAGAAGAGAATTTTACTGGTTTGGATGCTAGGTTGTCAAAGTCTGCGTTGAGATACTCGAGGAGAGTGTATTCTGATTTAGGCATCAGCAGCAACTTGATGGATCTTATGGCTACGACCGAGGATGTGGAGTTTCAAAGAGATGGTTACGGTGTTGTGGAACATAGTTTTAAATCAGCTGAACAAGTTTCTAGTTCAAGATTTGGTAGTGGAAGATATTTCACAAGAGGAAAAAACTTATACAGGCCTTGTGGTACTGATAAGGATGCTTTTGGTTTGAATAAAGGCCATGTTGTAGAGGAGAATTCTTCAAAACAAGATGAGGTTTCTGGGTCAGCTTTCAATTCTGTTGCAACCAAGGCCATCTAA 1443 0.3971 MGFLNLSCIAESSISTSNSATSSKPSKIQHFHYSDLEAATNGFSDNKLLGKGSHGYVYKAILRGKPVAVKRPSRPHSLLHPNRPVSASSPEITNEVDNEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMSNGTLFDVLHSSNRTLNWGRRIRLALQTAKAVDVLHSSNPPVIHRDIKSANVLIDQDYNARLGDFGLALRGFDRIRSTPPAGTMGYLDPFYVTPDNLSTKIDVFSFGILLLEIISGRKAIDVAYSPPSVVDWAIPLIKKGKFFTVYDPRIAPPKDPVVRKQLVLIAAKCVRSCRERRPSMNEVVNWLCGLCKLVPNHSWNGFNNPCMMVETVGRPIEPRNGQVSSRFAEENFTGLDARLSKSALRYSRRVYSDLGISSNLMDLMATTEDVEFQRDGYGVVEHSFKSAEQVSSSRFGSGRYFTRGKNLYRPCGTDKDAFGLNKGHVVEENSSKQDEVSGSAFNSVATKAI 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04992 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vifa4g04992 480 ProSiteProfiles Protein kinase domain profile. 43 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04992 480 SMART serkin_6 43 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04992 480 PANTHER OS01G0253100 PROTEIN 22 320 - -
Vifa4g04992 480 FunFam Serine/threonine-protein kinase-like protein At1g28390 13 130 - -
Vifa4g04992 480 SUPERFAMILY Protein kinase-like (PK-like) 25 328 IPR011009 -
Vifa4g04992 480 Pfam Protein kinase domain 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g04992 480 Gene3D Transferase(Phosphotransferase) domain 1 131 329 - -
Vifa4g04992 480 ProSitePatterns Protein kinases ATP-binding region signature. 49 70 IPR017441 GO:0005524
Vifa4g04992 480 FunFam Serine/threonine-protein kinase-like protein 131 331 - -
Vifa4g04992 480 Gene3D Phosphorylase Kinase; domain 1 13 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04992 Vifa-Chr4 1569178034 1569179476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04992 31 318 Receptor kinase-like Gene Family AT3G59420 43.771 2.84e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa4g04992 Pkinase 8.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04992 - - vum:124832395 727.628