Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04985 ATGTATAACCACTGCGATGGAAACAACTCTGAGTTGCCTCTTCAACCTATTGATAATGATAATTCTGATCAGCTTTCTCTGTCTTTCCGTGGTCAAGTCTATGTCTTTGAATCTGTCACTCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATCTGAACTGCCTCAAGCGGGTACACGATATGTGGATGCCGTGCCTCAACAAACTCAGAGACTCAACCTTGTTGAAAGTCTCCGTTCCAACCTCGCCGTTCTTCTCCCCAACGTTGATTCGCTTTCAAGGGCTTCCAACGAGGAAGACGCCCATGTTCTCATTTTTGACCGCGTTGCTTCTCATCCAAACGCACTCCGCCGTACCCAGCCATCCCTCTTCAACCTGCGTCTCAGACTTCGCTCCGACTGCATCACAATCCAGCGGCGCCGGCGGCATACCCTCACTCCCTAG 450 0.5044 MYNHCDGNNSELPLQPIDNDNSDQLSLSFRGQVYVFESVTPDKVQAVLLLLGGSELPQAGTRYVDAVPQQTQRLNLVESLRSNLAVLLPNVDSLSRASNEEDAHVLIFDRVASHPNALRRTQPSLFNLRLRLRSDCITIQRRRRHTLTP 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04985 149 ProSiteProfiles Tify domain profile. 18 53 IPR010399 -
Vifa4g04985 149 Pfam tify domain 21 52 IPR010399 -
Vifa4g04985 149 SMART tify_2 18 53 IPR010399 -
Vifa4g04985 149 PANTHER GATA TRANSCRIPTION FACTOR 28 17 74 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04985 Vifa-Chr4 1567011433 1567012134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04985 20 82 Tify Gene Family AT1G51600 51.389 7.12e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa4g04985 tify 6.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04985 - - pvu:PHAVU_008G182900g 81.2629