Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04984 ATGGGTAGGGGGAAAATTGAGATTAAGAGAATTGAAAATTCTAATAGCAGACAAGTTACATTTTCTAAGAGGAGAACTGGCTTGTTGAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAGGTTGCTGTCATCATTTTTTCAAACACAGGGAAGCTTTTTGAGTTTTCTAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCGCAGATTCTTCTGAGAGTGCATCAGTGGAATATAAAGCAGAGAAGGAAGATTCTAAGATGGTGGAGATTCTTAAAGATGAAGTTGTAAAACTAGAAACAAATCAATTACGGCTGTTGGGAAAGGACTTAGCAGGATTGGGATTTAAGGAACTGCAACTTCTAGAGCAGCAAATTAACGACGCGTTATTATCCGTGAAGGAGAAGAAGGAAGAATTACTTATGGAGCAACTGGAGCAGTCTAGGATACAGGAACAGAAGGCTATGCTGGAGAATGAAACTTTGCGCAGACAGGTTGAGGAATTTCGGTGCTTGTTTCCAATGACGGAACATGTGATTCCAAATTATCTTCAGTATCACCATGTGGAAAGAAATAATTCCTTTGTAGATAATGGTGTTAAATGTTCCAGCTTGGCAAGAAGCTGCTCAAATGACAAAGGAGATTCAGACACCACATTGCATTTAGGGTTACCAGCTGATGTTCATCACAAGAGGAAGAGTCCTGAGAAAAAAACCTTTTCTAATGATTCATAG 747 0.3936 MGRGKIEIKRIENSNSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCADSSESASVEYKAEKEDSKMVEILKDEVVKLETNQLRLLGKDLAGLGFKELQLLEQQINDALLSVKEKKEELLMEQLEQSRIQEQKAMLENETLRRQVEEFRCLFPMTEHVIPNYLQYHHVERNNSFVDNGVKCSSLARSCSNDKGDSDTTLHLGLPADVHHKRKSPEKKTFSNDS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04984 248 Coils Coil 149 169 - -
Vifa4g04984 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g04984 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g04984 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vifa4g04984 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g04984 248 Coils Coil 123 143 - -
Vifa4g04984 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g04984 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g04984 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g04984 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g04984 248 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g04984 248 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Vifa4g04984 248 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vifa4g04984 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Vifa4g04984 248 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g04984 248 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04984 Vifa-Chr4 1566548215 1566551540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04984 1 248 MADS-box Gene Family AT5G13790 55.777 4.15e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g04984 K-box 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04984 - - rcu:8259342 351.288