Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04980 ATGAGCAAAGCAATTACTACTTCTCTTGTTCTATCCTTTCTCATTATTCTCTCACACTTTGTGATTGAAATCCATGGAAAAAACAAACAAGTTGAAGCTCTTGACAATCTTCACAAGGCAAAATACATAGAAAATTCAGAAATTGACAAGACTGAATTTGAGGCACAAGAGATTGTGTATGACATTGATGCCATTGCTGATTCTCAAAAGGGTCTCAAACAGAAAGATAGAATCAAGAAGCTTCCTGGTCAACCCTATGTGAAATTCTCTCAATTTGGAGGGTATGTTACATTCGATAAATTGAGTGGTACTGCTTTTTACTATTACTTTGTTGAAGCTCATCAATCTAAAGAAACACTTCCACTCCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTAGCTTATGGAGCAATGCAAGAATTGGGACCTTTTAGAGTAAACAGTGATGGAAAAACACTTCACCAAAATAGATACTCATGGAATTATGCTGCAAATGTTTTGTTCTTGGAGTCTCCAGTTGGAGTAGGATTTTCTTACTCAAACAAATCATCAGAGTATAGTAGCAATGGAGACAAGAAAACAGCTAAAGATAATTATTTATTTTTGGTAAATTGGTTGGAAAGATTTCCAGAATATAAAAATAGAGATTTCTATATTTCTGGAGAAAGTTATGCTGGACATTATGTTCCTCAACTTGCTCATACCATTCTCTATCATAATAAAAAGGCAAATAAGACAATCATCAACCTCAAAGGAATCTTGATAGGAAATGCAGTGATCCATGATACAACGGACTCAACTGGAATGTATGATTTTCTTGCTACTCATGCTATCATCTCAGACAAAGCAGCTCATTATGTCAACAAAGTTTGTGATTTCTCATCATCTGATAATCTCACTGCTGAATGCAATTCAGTTGCTGATGAAGTTAATGAAGATATTGCATTCATTGATTTGTATAACATTTATGCTCCACTATGCAAGAATGAGAATCTCACTTCCAAGCCCAAAAAGAACACTATTGTGACTGATCCATGCAGTGAGAATTATGTGTATGCTTATCTTAATAGACCAGATGTTCAAGAGGCTATTCATGCTAATGTCACAAAACTCAAATATGAATGGAGTCCATGCAGTGGTGTCATTGGAAAATGGATTGATAGCTCTCCAACAGTTCTCCCTCTTTTACATGAATTCCTCAATAGCAGCCTCAGAGTTTGGATTTTCAGTGGTGATACAGACGGAAGGGTTCCTGTTACTTCGACTAAGTATTCGATTAAGAAGATGAACCTTCCTGTTAAAACTGTTTGGCACCCTTGGTTAGCCTATGGAGAAGTTGGTGGCTATACTGAAGTATACAAGGGAGGCCTAACATTTGTTACAGTGAGAGAAGCAGGACATCAAGTGCCAAGTTACCAACCAGCAAGAGCTCTTACTTTGATTAAACATTTCTTGGATGGCACTCCTCTTCCTTCTCCAAAAATAAAGGCATAG 1500 0.3687 MSKAITTSLVLSFLIILSHFVIEIHGKNKQVEALDNLHKAKYIENSEIDKTEFEAQEIVYDIDAIADSQKGLKQKDRIKKLPGQPYVKFSQFGGYVTFDKLSGTAFYYYFVEAHQSKETLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHQNRYSWNYAANVLFLESPVGVGFSYSNKSSEYSSNGDKKTAKDNYLFLVNWLERFPEYKNRDFYISGESYAGHYVPQLAHTILYHNKKANKTIINLKGILIGNAVIHDTTDSTGMYDFLATHAIISDKAAHYVNKVCDFSSSDNLTAECNSVADEVNEDIAFIDLYNIYAPLCKNENLTSKPKKNTIVTDPCSENYVYAYLNRPDVQEAIHANVTKLKYEWSPCSGVIGKWIDSSPTVLPLLHEFLNSSLRVWIFSGDTDGRVPVTSTKYSIKKMNLPVKTVWHPWLAYGEVGGYTEVYKGGLTFVTVREAGHQVPSYQPARALTLIKHFLDGTPLPSPKIKA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04980 499 Gene3D - 348 384 - -
Vifa4g04980 499 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Vifa4g04980 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 476 IPR001563 GO:0004185|GO:0006508
Vifa4g04980 499 FunFam Carboxypeptidase 394 489 - -
Vifa4g04980 499 Pfam Serine carboxypeptidase 83 489 IPR001563 GO:0004185|GO:0006508
Vifa4g04980 499 Gene3D alpha/beta hydrolase 73 331 IPR029058 -
Vifa4g04980 499 FunFam Carboxypeptidase 72 331 - -
Vifa4g04980 499 Gene3D - 394 489 - -
Vifa4g04980 499 SUPERFAMILY alpha/beta-Hydrolases 78 493 IPR029058 -
Vifa4g04980 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 181 IPR001563 GO:0004185|GO:0006508
Vifa4g04980 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Vifa4g04980 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 170 IPR001563 GO:0004185|GO:0006508
Vifa4g04980 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 459 472 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04980 Vifa-Chr4 1564896493 1564899320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04980 368 492 Calmodulin-binding Proteins AT2G22960 29.104 1.71e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04980 K16297 - gmx:100783864 766.533